View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8963_low_19 (Length: 476)

Name: NF8963_low_19
Description: NF8963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8963_low_19
NF8963_low_19
[»] chr6 (16 HSPs)
chr6 (80-463)||(7564504-7564887)
chr6 (23-149)||(176599-176725)
chr6 (326-453)||(1470922-1471049)
chr6 (326-453)||(1459540-1459667)
chr6 (314-440)||(176272-176398)
chr6 (324-427)||(370782-370885)
chr6 (315-417)||(1442096-1442198)
chr6 (325-421)||(1453838-1453934)
chr6 (325-421)||(1465530-1465626)
chr6 (78-153)||(1459275-1459355)
chr6 (114-153)||(370569-370608)
chr6 (80-153)||(1453587-1453660)
chr6 (80-153)||(1465279-1465352)
chr6 (329-379)||(9819831-9819881)
chr6 (329-378)||(9703888-9703937)
chr6 (322-374)||(24417481-24417533)
[»] chr7 (2 HSPs)
chr7 (325-433)||(3927004-3927112)
chr7 (319-379)||(1078152-1078212)
[»] chr4 (3 HSPs)
chr4 (326-418)||(55419742-55419834)
chr4 (324-374)||(22672124-22672174)
chr4 (78-119)||(55420068-55420109)
[»] scaffold0044 (1 HSPs)
scaffold0044 (317-384)||(89137-89204)
[»] chr2 (8 HSPs)
chr2 (319-368)||(6538844-6538893)
chr2 (325-374)||(7160752-7160801)
chr2 (325-374)||(7168688-7168737)
chr2 (317-374)||(7156182-7156239)
chr2 (317-368)||(7174363-7174414)
chr2 (317-384)||(33026651-33026718)
chr2 (317-387)||(11237684-11237754)
chr2 (326-374)||(36577370-36577418)
[»] chr3 (20 HSPs)
chr3 (324-379)||(2442038-2442093)
chr3 (327-384)||(2456243-2456300)
chr3 (319-384)||(9608336-9608401)
chr3 (326-374)||(3754604-3754652)
chr3 (317-384)||(2631351-2631418)
chr3 (324-374)||(4142131-4142181)
chr3 (324-374)||(4157941-4157991)
chr3 (327-384)||(771499-771556)
chr3 (317-382)||(7324421-7324486)
chr3 (327-382)||(2644362-2644417)
chr3 (317-384)||(9561975-9562042)
chr3 (329-380)||(13498222-13498273)
chr3 (324-374)||(803215-803265)
chr3 (324-374)||(1007465-1007515)
chr3 (324-374)||(1022493-1022543)
chr3 (324-374)||(2696729-2696779)
chr3 (326-374)||(2459279-2459327)
chr3 (331-379)||(2502147-2502195)
chr3 (327-379)||(2659152-2659204)
chr3 (319-379)||(12133096-12133156)
[»] chr5 (4 HSPs)
chr5 (326-374)||(11081817-11081865)
chr5 (324-374)||(23766859-23766909)
chr5 (324-374)||(23816707-23816757)
chr5 (329-382)||(20292991-20293044)
[»] chr1 (1 HSPs)
chr1 (317-378)||(51381445-51381506)


Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 80 - 463
Target Start/End: Original strand, 7564504 - 7564887
Alignment:
Q  80 ggagaatctttgagagccagcatagcaaagcaagtaggtcaaggtgatatgagactctcaacatagacattagacgagaaatcggtaaaagcgacatttt 179  Q
    ||||||||| ||||| ||| |||||||||||  |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  7564504 ggagaatctctgagatccaacatagcaaagcgtgtaggtcaaggtgatacgagactctcaacatagacattagaggagaaatcggtaaaagcgagatttt 7564603  T
Q  180 gaatccccgaaatctttacggtaccattcttataattgtaaacatataacttaccacaaaagtcaagcaacacttggtcatcctcctcataaataaaaag 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7564604 gaatccccgaaatctttacggtaccattcttataattgtaaacatataacttaccacaaaagtcaagcaacacttggtcatcctcctcatagataaaaag 7564703  T
Q  280 cagacgtgcatagaaataatcaatgaattctgtgaatggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatcc 379  Q
    || | |||||||| ||| |||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  7564704 cacaggtgcatagcaattatcactgaattctttgaatggaacactgaacaatttagtccaagaatccttgtttccataatccttcataacccaaatattc 7564803  T
Q  380 aaaaaagttgtagtttgagcaaggacgcataagcaatccctacaaacccctaagctaaagtaacgcagacgttcgtcaacacca 463  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  7564804 aaaaaagttgtagtgtgagcaaggacccataagcaatccctacaaacccctaagctaaagtaacgcagacgttggtgaacacca 7564887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 23 - 149
Target Start/End: Complemental strand, 176725 - 176599
Alignment:
Q  23 taatgaacatagaaccaacataaaataaattaaataataaacggaaacaccacaggaggagaatctttgagagccagcatagcaaagcaagtaggtcaag 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  176725 taatgaacatagaaccaacataaaataaattaaataataaacggaaacaccacaggaggagaatctttgagagccagcagagcaaagcaagtaggtcaag 176626  T
Q  123 gtgatatgagactctcaacatagacat 149  Q
    |||||||||||||||||||||||||||    
T  176625 gtgatatgagactctcaacatagacat 176599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 326 - 453
Target Start/End: Original strand, 1470922 - 1471049
Alignment:
Q  326 aacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatccctacaaa 425  Q
    |||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||| | | || |||||||||| ||||||| |||||||| |||    
T  1470922 aacaatttagaccaagaatctttatttccataatctttcataacccaaatatccaaaaaagatttggtatgagcaaggatgcataagtaatccctagaaa 1471021  T
Q  426 cccctaagctaaagtaacgcagacgttc 453  Q
    |||| |||||||||| ||||||| ||||    
T  1471022 cccccaagctaaagttacgcagaggttc 1471049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 326 - 453
Target Start/End: Original strand, 1459540 - 1459667
Alignment:
Q  326 aacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatccctacaaa 425  Q
    ||||||||||||||||| || ||||||||| |||| ||||||||||||||||||||||||| | | || |||||||||||||||||| |||||||| |||    
T  1459540 aacaatttagtccaagattctttatttccaaaatctttcataacccaaatatccaaaaaagattttgtatgagcaaggacgcataagtaatccctataaa 1459639  T
Q  426 cccctaagctaaagtaacgcagacgttc 453  Q
    |||| |||||||||| | ||||| ||||    
T  1459640 cccccaagctaaagttatgcagaggttc 1459667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 314 - 440
Target Start/End: Complemental strand, 176398 - 176272
Alignment:
Q  314 aatggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagc 413  Q
    ||||||| | |||||||||||||||||||||| |||||||||||||| ||||||  |||||||||||||||||||   || |||||||||||||||| ||    
T  176398 aatggaagagtgaacaatttagtccaagaatctttatttccataatcattcatacgccaaatatccaaaaaagtttcggtgtgagcaaggacgcataggc 176299  T
Q  414 aatccctacaaacccctaagctaaagt 440  Q
    |||||||| ||||||| ||||| ||||    
T  176298 aatccctagaaacccccaagctgaagt 176272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 324 - 427
Target Start/End: Original strand, 370782 - 370885
Alignment:
Q  324 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatccctaca 423  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||   ||| ||||||| |||| |||||||||| |||||||||||||||| |    
T  370782 tgaacaatttagtccaagaatctttatttccataattcttcataacccaaacgcccataaaagttttagtctgagcaaggatgcataagcaatccctaga 370881  T
Q  424 aacc 427  Q
    ||||    
T  370882 aacc 370885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 315 - 417
Target Start/End: Original strand, 1442096 - 1442198
Alignment:
Q  315 atggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagca 414  Q
    |||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||  ||||||||| ||||    |||||||||||| |||||||||    
T  1442096 atggaacagtgaacaatttagtccaagaatctttaattccataatccttcataacccatgtatccaaaatagttccgttttgagcaaggatgcataagca 1442195  T
Q  415 atc 417  Q
    |||    
T  1442196 atc 1442198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 325 - 421
Target Start/End: Original strand, 1453838 - 1453934
Alignment:
Q  325 gaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatcccta 421  Q
    |||||||||| ||||||| || ||||||||||||| |||||||||||| ||||||||| |     |||  |||||||||| ||||||||||||||||    
T  1453838 gaacaatttattccaagagtctttatttccataatacttcataacccagatatccaaagagtcattagcgtgagcaaggatgcataagcaatcccta 1453934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 325 - 421
Target Start/End: Original strand, 1465530 - 1465626
Alignment:
Q  325 gaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatcccta 421  Q
    |||||||||| ||||||| || ||||||||||||| |||||||||||| ||||||||| |     |||  |||||||||| ||||||||||||||||    
T  1465530 gaacaatttattccaagagtctttatttccataatacttcataacccagatatccaaagagtcattagcgtgagcaaggatgcataagcaatcccta 1465626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 153
Target Start/End: Original strand, 1459275 - 1459355
Alignment:
Q  78 gaggagaatctttgagagccagcatagcaaagcaa-----gtaggtcaaggtgatatgagactctcaacatagacattaga 153  Q
    |||||||||||| |||||||| ||||||| |||||     ||||||||||||||||||||||||||  | |||||||||||    
T  1459275 gaggagaatcttcgagagccaacatagcacagcaaataatgtaggtcaaggtgatatgagactctctgcgtagacattaga 1459355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 153
Target Start/End: Original strand, 370569 - 370608
Alignment:
Q  114 taggtcaaggtgatatgagactctcaacatagacattaga 153  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  370569 taggtcaaggtgatatgagactctcaacgtagacattaga 370608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 80 - 153
Target Start/End: Original strand, 1453587 - 1453660
Alignment:
Q  80 ggagaatctttgagagccagcatagcaaagcaagtaggtcaaggtgatatgagactctcaacatagacattaga 153  Q
    ||||||| || ||||| || ||||| |||||||  |||| |||||||| ||||||||||||| |||||||||||    
T  1453587 ggagaatattcgagagtcaacataggaaagcaataaggttaaggtgatgtgagactctcaacgtagacattaga 1453660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 80 - 153
Target Start/End: Original strand, 1465279 - 1465352
Alignment:
Q  80 ggagaatctttgagagccagcatagcaaagcaagtaggtcaaggtgatatgagactctcaacatagacattaga 153  Q
    ||||||| || ||||| || ||||| |||||||  |||| |||||||| ||||||||||||| |||||||||||    
T  1465279 ggagaatattcgagagtcaacataggaaagcaataaggttaaggtgatgtgagactctcaacgtagacattaga 1465352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 379
Target Start/End: Original strand, 9819831 - 9819881
Alignment:
Q  329 aatttagtccaagaatccttatttccataatccttcataacccaaatatcc 379  Q
    |||||||||||||| ||  |||||||||| |||||||||| ||||||||||    
T  9819831 aatttagtccaagagtctctatttccatattccttcataagccaaatatcc 9819881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 378
Target Start/End: Original strand, 9703888 - 9703937
Alignment:
Q  329 aatttagtccaagaatccttatttccataatccttcataacccaaatatc 378  Q
    |||||||||||| ||||  |||||||||| |||||||||| |||||||||    
T  9703888 aatttagtccaaaaatctctatttccatattccttcataagccaaatatc 9703937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 374
Target Start/End: Original strand, 24417481 - 24417533
Alignment:
Q  322 actgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 374  Q
    |||| |||||||||||||||| || ||||||||||| || ||||||| |||||    
T  24417481 actgtacaatttagtccaagattctttatttccatattctttcataatccaaa 24417533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 325 - 433
Target Start/End: Complemental strand, 3927112 - 3927004
Alignment:
Q  325 gaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatccctacaa 424  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||| |||| ||||||  ||| | | ||||||| || ||||||||| || ||    
T  3927112 gaacaatttagtccaagaatttttatttccataatccttcataacccaaatacccaacaaagtttcagtgtaaacaaggacacacaagcaatccttagaa 3927013  T
Q  425 acccctaag 433  Q
    |||||||||    
T  3927012 acccctaag 3927004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 379
Target Start/End: Original strand, 1078152 - 1078212
Alignment:
Q  319 aacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatcc 379  Q
    |||| |||||||||||||||| || ||  |||||||||| |||||||||||||||| ||||    
T  1078152 aacattgaacaatttagtccacgactctctatttccatactccttcataacccaaacatcc 1078212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 326 - 418
Target Start/End: Complemental strand, 55419834 - 55419742
Alignment:
Q  326 aacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatcc 418  Q
    |||||||||||||||||||| |||||||||||| ||||||||| ||| |||||||||||||   | || ||||||| ||||||||||||||||    
T  55419834 aacaatttagtccaagaatctttatttccataaaccttcataagccagatatccaaaaaagaattggtgtgagcaacgacgcataagcaatcc 55419742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 324 - 374
Target Start/End: Original strand, 22672124 - 22672174
Alignment:
Q  324 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 374  Q
    ||||||||||||||||||| |||||||||||||| |||||||| |||||||    
T  22672124 tgaacaatttagtccaagattccttatttccatattccttcattacccaaa 22672174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 55420109 - 55420068
Alignment:
Q  78 gaggagaatctttgagagccagcatagcaaagcaagtaggtc 119  Q
    |||||||||||| ||||| ||||||||||||||| |||||||    
T  55420109 gaggagaatcttcgagagacagcatagcaaagcatgtaggtc 55420068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 317 - 384
Target Start/End: Complemental strand, 89204 - 89137
Alignment:
Q  317 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaa 384  Q
    |||||| || |||||||||||||||| || ||||||||||| |||||||||||||||||||| |||||    
T  89204 ggaacattgtacaatttagtccaagactctttatttccatattccttcataacccaaatatcaaaaaa 89137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 319 - 368
Target Start/End: Complemental strand, 6538893 - 6538844
Alignment:
Q  319 aacactgaacaatttagtccaagaatccttatttccataatccttcataa 368  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  6538893 aacactgaacaatttagtccaagaatctttatttccatactccttcataa 6538844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 325 - 374
Target Start/End: Original strand, 7160752 - 7160801
Alignment:
Q  325 gaacaatttagtccaagaatccttatttccataatccttcataacccaaa 374  Q
    ||||||||||||||||||||| ||||||||||| |||||||||| |||||    
T  7160752 gaacaatttagtccaagaatcattatttccatactccttcataagccaaa 7160801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 325 - 374
Target Start/End: Original strand, 7168688 - 7168737
Alignment:
Q  325 gaacaatttagtccaagaatccttatttccataatccttcataacccaaa 374  Q
    ||||||||||||||||||||| ||||||||||| |||||||||| |||||    
T  7168688 gaacaatttagtccaagaatcgttatttccatattccttcataagccaaa 7168737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 317 - 374
Target Start/End: Original strand, 7156182 - 7156239
Alignment:
Q  317 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 374  Q
    ||||||| ||||||||||| ||||||||| | ||||||||| |||||||||| |||||    
T  7156182 ggaacacggaacaatttagcccaagaatcttcatttccatactccttcataagccaaa 7156239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 368
Target Start/End: Original strand, 7174363 - 7174414
Alignment:
Q  317 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataa 368  Q
    ||||||| ||||||| ||||||||||||| | ||||||||| ||||||||||    
T  7174363 ggaacacggaacaatctagtccaagaatcttgatttccatattccttcataa 7174414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 384
Target Start/End: Complemental strand, 33026718 - 33026651
Alignment:
Q  317 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaa 384  Q
    ||||||| | ||||| |||||||||| |  ||||||||||| | |||||||||||||| |||||||||    
T  33026718 ggaacacggtacaatctagtccaagactttttatttccatattgcttcataacccaaacatccaaaaa 33026651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 387
Target Start/End: Complemental strand, 11237754 - 11237684
Alignment:
Q  317 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagt 387  Q
    ||||||| |||||||||||||||||  ||  |||||||||| |||| ||||| ||||| ||| ||||||||    
T  11237754 ggaacacggaacaatttagtccaagtttctctatttccatactcctccataagccaaacatcgaaaaaagt 11237684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 374
Target Start/End: Complemental strand, 36577418 - 36577370
Alignment:
Q  326 aacaatttagtccaagaatccttatttccataatccttcataacccaaa 374  Q
    ||||||||| ||||||| || ||||||||||| |||||||||| |||||    
T  36577418 aacaatttaatccaagactctttatttccatattccttcataatccaaa 36577370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 379
Target Start/End: Complemental strand, 2442093 - 2442038
Alignment:
Q  324 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatcc 379  Q
    |||||||||||||||||||||| ||||||||||| |||||||||| ||||| ||||    
T  2442093 tgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 2442038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 327 - 384
Target Start/End: Complemental strand, 2456300 - 2456243
Alignment:
Q  327 acaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaa 384  Q
    |||||||||||||||| || ||||||||||| |||||||||||||||| |||| ||||    
T  2456300 acaatttagtccaagagtctttatttccatattccttcataacccaaacatcccaaaa 2456243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 319 - 384
Target Start/End: Original strand, 9608336 - 9608401
Alignment:
Q  319 aacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaa 384  Q
    ||||||| | |||||||||||||||||  |||||||||| |||||||||||||||| ||| |||||    
T  9608336 aacactgtataatttagtccaagaatctatatttccatattccttcataacccaaacatcaaaaaa 9608401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 326 - 374
Target Start/End: Complemental strand, 3754652 - 3754604
Alignment:
Q  326 aacaatttagtccaagaatccttatttccataatccttcataacccaaa 374  Q
    ||||||||||||||||| || ||||||||||| ||||||||||||||||    
T  3754652 aacaatttagtccaagactctttatttccatattccttcataacccaaa 3754604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 317 - 384
Target Start/End: Complemental strand, 2631418 - 2631351
Alignment:
Q  317 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaa 384  Q
    ||||||||| |||||||||||||||| || | ||||||||| |||||||||| ||||| || ||||||    
T  2631418 ggaacactgcacaatttagtccaagactcttgatttccatattccttcataatccaaacattcaaaaa 2631351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 374
Target Start/End: Original strand, 4142131 - 4142181
Alignment:
Q  324 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 374  Q
    ||||||||||||||||||| || ||||||||||| |||||||||| |||||    
T  4142131 tgaacaatttagtccaagactctttatttccatattccttcataagccaaa 4142181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 374
Target Start/End: Original strand, 4157941 - 4157991
Alignment:
Q  324 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 374  Q
    ||||||||||||||||||| || ||||||||||| |||||||||| |||||    
T  4157941 tgaacaatttagtccaagactctttatttccatattccttcataagccaaa 4157991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 327 - 384
Target Start/End: Original strand, 771499 - 771556
Alignment:
Q  327 acaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaa 384  Q
    |||||||||||||||| ||  |||||||||| |||||||||||||||| |||| ||||    
T  771499 acaatttagtccaagagtctgtatttccatattccttcataacccaaacatcccaaaa 771556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 317 - 382
Target Start/End: Original strand, 7324421 - 7324486
Alignment:
Q  317 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaa 382  Q
    ||||||||  |||||||||||||||| || |||||||| || |||||||||| ||||| |||||||    
T  7324421 ggaacactatacaatttagtccaagactctttatttccgtagtccttcataatccaaacatccaaa 7324486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 382
Target Start/End: Original strand, 2644362 - 2644417
Alignment:
Q  327 acaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaa 382  Q
    |||||||||||||||| || | ||||||||| |||||||||| ||||| |||||||    
T  2644362 acaatttagtccaagactcttgatttccatactccttcataatccaaacatccaaa 2644417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 384
Target Start/End: Original strand, 9561975 - 9562042
Alignment:
Q  317 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaa 384  Q
    ||||||||| | |||||||||||||| || | ||||||||| || ||||||| ||||| |||||||||    
T  9561975 ggaacactgtataatttagtccaagactcttgatttccatactcattcataatccaaacatccaaaaa 9562042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 13498273 - 13498222
Alignment:
Q  329 aatttagtccaagaatccttatttccataatccttcataacccaaatatcca 380  Q
    |||||||||||||| || ||||||||||| |||||||||| ||||| |||||    
T  13498273 aatttagtccaagactctttatttccatattccttcataatccaaacatcca 13498222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 374
Target Start/End: Original strand, 803215 - 803265
Alignment:
Q  324 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 374  Q
    ||||||| ||||||||||| || ||||||||||| || |||||||||||||    
T  803215 tgaacaacttagtccaagactctttatttccatattctttcataacccaaa 803265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 374
Target Start/End: Complemental strand, 1007515 - 1007465
Alignment:
Q  324 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 374  Q
    |||||||||||||||| || || ||||||||||| |||||||| |||||||    
T  1007515 tgaacaatttagtccaggactcgttatttccatattccttcattacccaaa 1007465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 374
Target Start/End: Complemental strand, 1022543 - 1022493
Alignment:
Q  324 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 374  Q
    |||||||||||||||| || || ||||||||||| |||||||| |||||||    
T  1022543 tgaacaatttagtccatgactcgttatttccatattccttcattacccaaa 1022493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 374
Target Start/End: Original strand, 2696729 - 2696779
Alignment:
Q  324 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 374  Q
    ||||||||||| ||||||| || ||||||||||| |||||||||| |||||    
T  2696729 tgaacaatttaatccaagactctttatttccatattccttcataatccaaa 2696779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 374
Target Start/End: Complemental strand, 2459327 - 2459279
Alignment:
Q  326 aacaatttagtccaagaatccttatttccataatccttcataacccaaa 374  Q
    |||||||| |||||||| || ||||||||||| |||||||||| |||||    
T  2459327 aacaattttgtccaagactctttatttccatattccttcataatccaaa 2459279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 331 - 379
Target Start/End: Complemental strand, 2502195 - 2502147
Alignment:
Q  331 tttagtccaagaatccttatttccataatccttcataacccaaatatcc 379  Q
    |||||||||| | |||||||||||||| |||||||||| ||||| ||||    
T  2502195 tttagtccaaaactccttatttccatactccttcataatccaaacatcc 2502147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 327 - 379
Target Start/End: Original strand, 2659152 - 2659204
Alignment:
Q  327 acaatttagtccaagaatccttatttccataatccttcataacccaaatatcc 379  Q
    |||||||||||||||| || | ||||||||| |||||||||| ||||| ||||    
T  2659152 acaatttagtccaagactcttgatttccatactccttcataatccaaacatcc 2659204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 379
Target Start/End: Complemental strand, 12133156 - 12133096
Alignment:
Q  319 aacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatcc 379  Q
    |||| |||||||||||||||| || ||  |||||||||| ||| |||||||||||| ||||    
T  12133156 aacattgaacaatttagtccacgactctctatttccatactccctcataacccaaacatcc 12133096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 326 - 374
Target Start/End: Complemental strand, 11081865 - 11081817
Alignment:
Q  326 aacaatttagtccaagaatccttatttccataatccttcataacccaaa 374  Q
    ||||||||||||||||| || ||||||||||| ||||||||||||||||    
T  11081865 aacaatttagtccaagactctttatttccatactccttcataacccaaa 11081817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 374
Target Start/End: Original strand, 23766859 - 23766909
Alignment:
Q  324 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 374  Q
    ||||||||||||||||||| || ||||||||||| || ||||||| |||||    
T  23766859 tgaacaatttagtccaagactctttatttccatattctttcataatccaaa 23766909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 374
Target Start/End: Original strand, 23816707 - 23816757
Alignment:
Q  324 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 374  Q
    ||||||||||||||||||| || ||||||||||| || ||||||| |||||    
T  23816707 tgaacaatttagtccaagactctttatttccatattctttcataatccaaa 23816757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 382
Target Start/End: Complemental strand, 20293044 - 20292991
Alignment:
Q  329 aatttagtccaagaatccttatttccataatccttcataacccaaatatccaaa 382  Q
    |||||||||||||| || ||| ||||||| |||||||||| ||||| |||||||    
T  20293044 aatttagtccaagactctttaattccatattccttcataatccaaacatccaaa 20292991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 317 - 378
Target Start/End: Original strand, 51381445 - 51381506
Alignment:
Q  317 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatc 378  Q
    |||| ||||||||||||||||||||| || | ||||||||| || ||||||| |||||||||    
T  51381445 ggaatactgaacaatttagtccaagactcttcatttccatattctttcataatccaaatatc 51381506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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