View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8963_low_21 (Length: 467)
Name: NF8963_low_21
Description: NF8963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8963_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-153; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 171 - 449
Target Start/End: Original strand, 39627593 - 39627871
Alignment:
| Q |
171 |
gtagttttggatgattgaactaaactgccattagaaacaattttgcctctttgctatgcacacctttaatttctgtttttcatgttatcctaaagttagg |
270 |
Q |
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| T |
39627593 |
gtagttttggatgattgaactaaactgccattagaaacaattttgcctctttgctatgcacacctttaatttctgtttttcatgttatcctaaagttagg |
39627692 |
T |
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| Q |
271 |
tctgttagtatttgttctgctcatggaggagattcattcagtattgatttatttaaccaacaacagtgtggaaatatagctagaagttttttcttctgtt |
370 |
Q |
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| T |
39627693 |
tctgttagtatttgttctgctcatggaggagattcattcagtattgatttatttaaccaccaacagtgtggaaatatagctagaagttttttcttctgtt |
39627792 |
T |
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| Q |
371 |
agaccaatgttagtgtttatgtaagttcctaacattctatcttttggcctctaacttaagactcttttggtgccggtag |
449 |
Q |
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| T |
39627793 |
agaccaatgttagtgtttatgtaagttcctaacattctatcttttggcctctaacttaagactcttttggtgccggtag |
39627871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 171 - 409
Target Start/End: Original strand, 39616880 - 39617123
Alignment:
| Q |
171 |
gtagttttggatgattgaactaaactgccattagaaacaattttgcctctttgctatgcacacctttaatttctgttt---------ttcatgttatcct |
261 |
Q |
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| T |
39616880 |
gtagttttggattattgaactaaagtgccataagaaacaatttttcctctttgctatgcacagctttgatttctgtttcttctgtttttcatgttaccct |
39616979 |
T |
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| Q |
262 |
aaagttaggtctgttagtatttgttctgctcatggaggagattcattcagtattgatttatttaaccaacaacagtgtggaaatatagctagaagttttt |
361 |
Q |
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| T |
39616980 |
aaagtcaggtctgttggtatttgttctgctcatggaggagattc----agtattgatttatttaaccaccaacagtgtggaaatataactagaagttttt |
39617075 |
T |
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| Q |
362 |
tcttctgttagaccaatgttagtgtttatgtaagttcctaacattcta |
409 |
Q |
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| T |
39617076 |
tcttctgttagactgatgttagtatttatgtaagttcctaacgttcta |
39617123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 39627443 - 39627529
Alignment:
| Q |
21 |
agggatgattcggaaacttgagctttatgctctcataacttgagagccctgttacaatgtgactaatagataagaaaaatgacatgc |
107 |
Q |
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| T |
39627443 |
agggatgattcggaaacttgagctttatgctctcataacttgagagccctgttacaatgtgactaatagataagaaaaatgaaatgc |
39627529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 60 - 107
Target Start/End: Original strand, 39616772 - 39616819
Alignment:
| Q |
60 |
ttgagagccctgttacaatgtgactaatagataagaaaaatgacatgc |
107 |
Q |
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| T |
39616772 |
ttgagagccatgttacaatgtgactaatagataagaaaaatgacatgc |
39616819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 39616715 - 39616752
Alignment:
| Q |
21 |
agggatgattcggaaacttgagctttatgctctcataa |
58 |
Q |
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| T |
39616715 |
agggatgattcggaaacttgagctttatgctctcataa |
39616752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 24200365 - 24200402
Alignment:
| Q |
21 |
agggatgattcggaaacttgagctttatgctctcataa |
58 |
Q |
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| T |
24200365 |
agggaagatttggaaacttgagctttatgctctcataa |
24200402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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