View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8963_low_22 (Length: 423)
Name: NF8963_low_22
Description: NF8963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8963_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 16 - 410
Target Start/End: Complemental strand, 44731157 - 44730763
Alignment:
| Q |
16 |
tgcaaaaagctgtggcaaatcaacctatttctgttgccattgatgctagtggatctgactttcaattttacaaaagcggtgtctttagtggttcatatgg |
115 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
44731157 |
tgcaaaaagctgtcgcaaatcaacctatttctgttgccattgatgctagtggatctgactttcaattttacaaaagcggtgtctttagtggttcatgtgg |
44731058 |
T |
|
| Q |
116 |
aaccgagttggatcatggtgtcaccgctgtgggttatggtgtcggtaatgatggaaccaagtattggttggttaagaactcatggggaactgattggggc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44731057 |
aaccgagttggatcatggtgtcaccgctgtgggttatggtgtcggtaatgatggaaccaagtattggttggttaagaactcatggggaactgattggggc |
44730958 |
T |
|
| Q |
216 |
gaagaaggatacattaggatgcaaaggggagtggatgccgctgaaggactctgtggcattgcaatgcaagcatcttaccctactgcttaattctcaaact |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44730957 |
gaagaaggatacattaggatgcaaaggggagtggatgccgctgaaggactctgtggcattgcaatgcaagcatcttaccctactgcttaattctcaaact |
44730858 |
T |
|
| Q |
316 |
taatacttaagttacctaaactttgtaatttgagcaaaactgtgattgattgtgcatttataagctacattcatcatggtttctacaactagttg |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
44730857 |
taatacttaagttacctaaactttgtaatttgagcaaaactgtgattgattgtgcaattataagctacattcatcatggtttctacaactagttg |
44730763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 400
Target Start/End: Original strand, 30881638 - 30882029
Alignment:
| Q |
16 |
tgcaaaaagctgtggcaaatcaacctatttctgttgccattgatgctagtggatctgactttcaattttacaaaagcggtgtctttagtggttcatatgg |
115 |
Q |
| |
|
|||| |||||||||||||||||||| ||||| || || |||||||||||||| ||||||||||| ||||||||||| |||||||||| |||||||| ||| |
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|
| T |
30881638 |
tgcagaaagctgtggcaaatcaaccaatttccgtagctattgatgctagtgggtctgactttcagttttacaaaagtggtgtctttactggttcatgtgg |
30881737 |
T |
|
| Q |
116 |
aaccgagttggatcatggtgtcaccgctgtgggttatggtgtcggtaatgatggaaccaagtattggttggttaagaactcatggggaactgattggggc |
215 |
Q |
| |
|
||| |||||||| ||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
30881738 |
aactgagttggaccatggtgtcacagccgtaggttatggtgtcggtaatgatggaaccaagtattggttggttaagaattcatggggaactgattggggt |
30881837 |
T |
|
| Q |
216 |
gaagaaggatacattaggatgcaaaggggagtggatgccgctgaaggactctgtggcattgcaatgcaagcatcttaccctactgcttaattctcaaact |
315 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||| || |||||||| ||||||||||||||| ||||||||||||||||||||||| | |||||| |
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|
| T |
30881838 |
gaagaaggatacattaagatgcaaaggggagtcgatgcagccgaaggactttgtggcattgcaatggaagcatcttaccctactgcttaacttccaaact |
30881937 |
T |
|
| Q |
316 |
taatacttaagttacctaaactttgtaatttgagcaaaactgtgattgattgtgcatt-------tataagctacattcatcatggtttcta |
400 |
Q |
| |
|
|||| | || |||||||||||||||||||| || |||| ||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
30881938 |
taatgcgtatgttacctaaactttgtaattcgatcaaagctgtgattgattgtgcatttatcatctattagctacattcatcatggtttcta |
30882029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 343
Target Start/End: Complemental strand, 30719721 - 30719394
Alignment:
| Q |
16 |
tgcaaaaagctgtggcaaatcaacctatttctgttgccattgatgctagtggatctgactttcaattttacaaaagcggtgtctttagtggttcatatgg |
115 |
Q |
| |
|
|||| |||||||||||||||||||| ||||| || || |||||||||||||| ||||||||||| ||||||||||| |||||||||| |||||||| ||| |
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|
| T |
30719721 |
tgcagaaagctgtggcaaatcaaccaatttccgtagctattgatgctagtgggtctgactttcagttttacaaaagtggtgtctttactggttcatgtgg |
30719622 |
T |
|
| Q |
116 |
aaccgagttggatcatggtgtcaccgctgtgggttatggtgtcggtaatgatggaaccaagtattggttggttaagaactcatggggaactgattggggc |
215 |
Q |
| |
|
||| |||||||| ||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
30719621 |
aactgagttggaccatggtgtcacagccgtaggttatggtgtcggtaatgatggaaccaagtattggttggttaagaattcatggggaactgattggggt |
30719522 |
T |
|
| Q |
216 |
gaagaaggatacattaggatgcaaaggggagtggatgccgctgaaggactctgtggcattgcaatgcaagcatcttaccctactgcttaattctcaaact |
315 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||| || |||||||| ||||||||||||||| ||||||||||||||||||||||| | |||||| |
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|
| T |
30719521 |
gaagaaggatacattaagatgcaaaggggagtcgatgcagccgaaggactttgtggcattgcaatggaagcatcttaccctactgcttaacttccaaact |
30719422 |
T |
|
| Q |
316 |
taatacttaagttacctaaactttgtaa |
343 |
Q |
| |
|
|||| | || |||||||||||| ||||| |
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|
| T |
30719421 |
taatgcgtatgttacctaaactatgtaa |
30719394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 400
Target Start/End: Complemental strand, 16867542 - 16867160
Alignment:
| Q |
18 |
caaaaagctgtggcaaatcaacctatttctgttgccattgatgctagtggatctgactttcaattttacaaaagcggtgtctttagtggttcatatggaa |
117 |
Q |
| |
|
|||||||| ||||| |||||||| ||||| || ||||||||||||||||| || ||||||||||| |||||||| || ||||||| |||||||| |||| |
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|
| T |
16867542 |
caaaaagcagtggctaatcaaccgatttccgtagccattgatgctagtggttccgactttcaattctacaaaagtggcgtctttactggttcatgcggaa |
16867443 |
T |
|
| Q |
118 |
ccgagttggatcatggtgtcaccgctgtgggttatggtgtcggtaatgatggaaccaagtattggttggttaagaactcatggggaactgattggggcga |
217 |
Q |
| |
|
| ||||||||||||||||| ||||| |||||||||||||| ||||||||||||| ||||||||||||||||| ||||| |||||||| || ||||| || |
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| T |
16867442 |
ctgagttggatcatggtgttaccgccgtgggttatggtgttagtaatgatggaactaagtattggttggttaaaaactcttggggaaccgaatggggtga |
16867343 |
T |
|
| Q |
218 |
agaaggatacattaggatgcaaaggggagtggatgccgctgaaggactctgtggcattgcaatgcaagcatcttaccctactgcttaattctcaaactta |
317 |
Q |
| |
|
|||||||||||||| ||||||||| || || ||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||| | ||||| ||| |
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|
| T |
16867342 |
agaaggatacattatgatgcaaagaggtgttgatgctgctgaaggactttgtggcattgcaatgcaagcatcataccctactgcttaaatgtcaaaatta |
16867243 |
T |
|
| Q |
318 |
atacttaagttacctaaactttgtaatttgagcaaaactgtgattgattgtgcatttataagctacattcatcatggtttcta |
400 |
Q |
| |
|
||||||| |||| ||||||||||||||| | | ||| |||||| | |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
16867242 |
atacttatgttatctaaactttgtaattcaaactaaattgtgatggtttgtgcatttattagctacattcatcatggtttcta |
16867160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 16 - 303
Target Start/End: Original strand, 30892721 - 30893008
Alignment:
| Q |
16 |
tgcaaaaagctgtggcaaatcaacctatttctgttgccattgatgctagtggatctgactttcaattttacaaaagcggtgtctttagtggttcatatgg |
115 |
Q |
| |
|
|||||||||| ||||| |||||||| ||||| || ||||||||||| ||||| || || || |||||||||||||| |||||||| | |||||||| ||| |
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|
| T |
30892721 |
tgcaaaaagcagtggctaatcaaccaatttccgtagccattgatgcgagtggctccgatttccaattttacaaaagtggtgtcttcactggttcatgtgg |
30892820 |
T |
|
| Q |
116 |
aaccgagttggatcatggtgtcaccgctgtgggttatggtgtcggtaatgatggaaccaagtattggttggttaagaactcatggggaactgattggggc |
215 |
Q |
| |
|
|| |||||||||||||||| || |||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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|
| T |
30892821 |
tactcagttggatcatggtgttactgctgtgggttatggcattagtaatgatggaaccaagtattggttggttaagaattcatggggaaatgattggggt |
30892920 |
T |
|
| Q |
216 |
gaagaaggatacattaggatgcaaaggggagtggatgccgctgaaggactctgtggcattgcaatgcaagcatcttaccctactgctt |
303 |
Q |
| |
|
||||||||||||||||||||||||||| | || ||||| ||| ||||||| ||||||||||||||| |||||||| || ||||||| |
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|
| T |
30892921 |
gaagaaggatacattaggatgcaaaggagcgtagatgctgctcaaggactttgtggcattgcaatgatggcatcttatcccactgctt |
30893008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 16 - 400
Target Start/End: Original strand, 8899253 - 8899637
Alignment:
| Q |
16 |
tgcaaaaagctgtggcaaatcaacctatttctgttgccattgatgctagtggatctgactttcaattttacaaaagcggtgtctttagtggttcatatgg |
115 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||| || |||||||||||||| ||||||||||||||||||||||| ||||| |||| ||||||| || |
|
|
| T |
8899253 |
tgcaaaaagcagtggcaaatcaaccaatttctgtagcaattgatgctagtggctctgactttcaattttacaaaagtggtgtatttaccggttcatgcgg |
8899352 |
T |
|
| Q |
116 |
aaccgagttggatcatggtgtcaccgctgtgggttatggtgtcggtaatgatggaaccaagtattggttggttaagaactcatggggaactgattggggc |
215 |
Q |
| |
|
||| ||||||||||| |||||||| || || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8899353 |
aactgagttggatcacggtgtcactgccgtaggttatggtgtcagtaatgatggaaccaagtattggttggttaagaactcatggggaactgattggggt |
8899452 |
T |
|
| Q |
216 |
gaagaaggatacattaggatgcaaaggggagtggatgccgctgaaggactctgtggcattgcaatgcaagcatcttaccctactgcttaattctcaaact |
315 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||| || || |||||||| |||||||||||||||||||| ||||||||||||||||||||| | |||||| |
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|
| T |
8899453 |
gaagaaggttacattatgatgcaaaggggagttgaagctgctgaagggctctgtggcattgcaatgcaggcatcttaccctactgcttaaatgccaaact |
8899552 |
T |
|
| Q |
316 |
taatacttaagttacctaaactttgtaatttgagcaaaactgtgattgattgtgcatttataagctacattcatcatggtttcta |
400 |
Q |
| |
|
||||||||| ||||||||||||||||| || | | |||||||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8899553 |
taatacttatgttacctaaactttgtatttcaacctaaactgtgattgtttgtgcatttatcagctacattcatcatggtttcta |
8899637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 128; Significance: 5e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 16 - 307
Target Start/End: Original strand, 31727411 - 31727702
Alignment:
| Q |
16 |
tgcaaaaagctgtggcaaatcaacctatttctgttgccattgatgctagtggatctgactttcaattttacaaaagcggtgtctttagtggttcatatgg |
115 |
Q |
| |
|
|||||||||| || || |||||||| |||| || ||||||||||||||||| |||||||| |||||||||||||| ||||| |||| |||||||| ||| |
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|
| T |
31727411 |
tgcaaaaagccgtagctaatcaaccggtttcggtggccattgatgctagtggctctgacttccaattttacaaaagtggtgtatttactggttcatgtgg |
31727510 |
T |
|
| Q |
116 |
aaccgagttggatcatggtgtcaccgctgtgggttatggtgtcggtaatgatggaaccaagtattggttggttaagaactcatggggaactgattggggc |
215 |
Q |
| |
|
||| ||||||||||||||||| | | ||| ||||||||||| ||| | |||| || ||||||||||||| ||||| |||||||||||| | ||||| |
|
|
| T |
31727511 |
aactgagttggatcatggtgtagctgttgtaggttatggtgttggtgaagatgagactgagtattggttggtgaagaattcatggggaactcaatggggt |
31727610 |
T |
|
| Q |
216 |
gaagaaggatacattaggatgcaaaggggagtggatgccgctgaaggactctgtggcattgcaatgcaagcatcttaccctactgcttaatt |
307 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||| | |||||||| |||||||||||||||||| ||||||| || ||||| ||||| |
|
|
| T |
31727611 |
gaagaagggtacattaggatgcaaaggggtgtggatgcttcagaaggactatgtggcattgcaatgcaaccatcttatccaactgcataatt |
31727702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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