View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8963_low_24 (Length: 414)
Name: NF8963_low_24
Description: NF8963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8963_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 401; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 53491627 - 53491223
Alignment:
| Q |
1 |
ttttaacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcgactcaagtcattgtgattccagtgc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
53491627 |
ttttaacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcaactcaagtcattgtgattccagtgc |
53491528 |
T |
|
| Q |
101 |
cttacaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491527 |
cttacaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagag |
53491428 |
T |
|
| Q |
201 |
ataactgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491427 |
ataactgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttat |
53491328 |
T |
|
| Q |
301 |
ctatgttgtcttgttgttgctcttatattcttacatatgtcattttgcttctactgtttatgttcaatgagataccaaataaatcacttcaatttttcac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491327 |
ctatgttgtcttgttgttgctcttatattcttacatatgtcattttgcttctactgtttatgttcaatgagataccaaataaatcacttcaatttttcac |
53491228 |
T |
|
| Q |
401 |
aggtt |
405 |
Q |
| |
|
||||| |
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|
| T |
53491227 |
aggtt |
53491223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 2 - 405
Target Start/End: Complemental strand, 53499219 - 53498819
Alignment:
| Q |
2 |
tttaacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcgactcaagtcattgtgattccagtgcc |
101 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
53499219 |
tttaacagattggagcaatggtgatggttcatggcgatgacaagggattggtgctacctcctaaagtagcatcaactcaagtcattgtgattccagtgcc |
53499120 |
T |
|
| Q |
102 |
ttacaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagaga |
201 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
53499119 |
ttacaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgctgtgtgaagca-aaaatacgtgctgagttagattctagaga |
53499021 |
T |
|
| Q |
202 |
taactgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttatc |
301 |
Q |
| |
|
|| || |||||||||| |||||||||||| |||||| ||||||| ||||||||||||||||||||| |||||| |||||||| |||||| ||||||||| |
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| T |
53499020 |
tagctactctcctgaaaagaagtattctgaatgggaaatgaaaggcgtccctctaaggattgaaattaggccaatggatttagaaaataaacaggttatc |
53498921 |
T |
|
| Q |
302 |
tatgttgtcttgttgttgctcttatattcttacatatgtcattttgcttctactgtttatgttcaatgagataccaaataaatcacttcaatttttcaca |
401 |
Q |
| |
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||||||||| |||||||||||||||||||| || |||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
53498920 |
tatgttgtcctgttgttgctcttatattct--cacatgtcattttgcttctaccctgtatgttcaatgagacaccaaataaatcacttcaattttgcaca |
53498823 |
T |
|
| Q |
402 |
ggtt |
405 |
Q |
| |
|
|||| |
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|
| T |
53498822 |
ggtt |
53498819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 4 - 350
Target Start/End: Complemental strand, 16070303 - 16069958
Alignment:
| Q |
4 |
taacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcgactcaagtcattgtgattccagtgcctt |
103 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
16070303 |
taacagattggagtgatggtgatggttcatggtgatgacaagggattggtgctaccgcctaaagtagcatcaactcaagtcattgtgattccagtgcctt |
16070204 |
T |
|
| Q |
104 |
acaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagagata |
203 |
Q |
| |
|
||||| | |||||| | |||||||| ||||| ||||||||||| | ||||| |||||| |||||| ||||||| ||||| ||||||||||||||||||| |
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|
| T |
16070203 |
acaaaaacgttgattgtgaaggaatcaatgacgcttgtaaagcagccgtgaagatgttgcgtgaag-aaaaaattcgtgccgagttagattctagagata |
16070105 |
T |
|
| Q |
204 |
actgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttatcta |
303 |
Q |
| |
|
||| ||||| |||||| ||||||||||| |||||| |||||||||||||| ||| | |||||||||||| ||||| ||||| ||||||||||||||| | |
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| T |
16070104 |
actattctcttgaaagaaagtattctgaatgggaaatgaaaggtgtccctttaatggttgaaattgggctaaagggtttaggaaataagcaggttattaa |
16070005 |
T |
|
| Q |
304 |
tgttgtcttgttgttgctcttatattcttacatatgtcattttgctt |
350 |
Q |
| |
|
|||||| | || |||| ||| ||||||| ||||||||||| ||||| |
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|
| T |
16070004 |
tgttgttatattattgcacttgtattctttcatatgtcattatgctt |
16069958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 264
Target Start/End: Complemental strand, 53516516 - 53516478
Alignment:
| Q |
226 |
ttctgattgggaattgaaaggtgtccctctaaggattga |
264 |
Q |
| |
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|||||| |||||| ||||||||||||||||||||||||| |
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| T |
53516516 |
ttctgaatgggaaatgaaaggtgtccctctaaggattga |
53516478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 5 - 297
Target Start/End: Original strand, 45355149 - 45355440
Alignment:
| Q |
5 |
aacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcgactcaagtcattgtgattccagtgcctta |
104 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||| |||||||| |
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|
| T |
45355149 |
aacagattggggtgatggtgatggttcatggtgatgacaagggattggtgctgccacctaaagtagcatcagttcaagtcattgtgattcctgtgcctta |
45355248 |
T |
|
| Q |
105 |
caaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagagataa |
204 |
Q |
| |
|
|||||||| ||||||||||||||||| ||| | |||| ||||||||||||||||||| ||||| | ||| |||||||||| |||| | ||||| || |
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|
| T |
45355249 |
caaagatgctgatactcaaggaatctttgatgcctgtaccgcaactgtgaatatgttgttggaagc-aggaattcgtgctgagtcagatgccagagacaa |
45355347 |
T |
|
| Q |
205 |
ctgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggt |
297 |
Q |
| |
|
|| |||||||| | |||| |||||| | |||||| |||||||||| ||||||||||||||||| ||||| |||||||||| |||||||||||| |
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| T |
45355348 |
ctattctcctggatggaaatattctcagtgggaaatgaaaggtgttcctctaaggattgaaatcgggcccaaggatttagcaaataagcaggt |
45355440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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