View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8963_low_25 (Length: 403)
Name: NF8963_low_25
Description: NF8963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8963_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 33382291 - 33382680
Alignment:
| Q |
1 |
tgtttgaatgttctctatgtgtcgaattggtttgtgttttaactcttgcgattttacaacacatacctgaaattacattgcattcattgatgagtgaatt |
100 |
Q |
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| T |
33382291 |
tgtttgaatgttctctatgtgtcgaattggtttgtgttttaactcttgcgattttacaacacatacctgaaattacattgcattcattgatgggtgaatt |
33382390 |
T |
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| Q |
101 |
ttcaaacaagtagtttattttggaaatcattttcaataactggtttatttttttnnnnnnnnnngtgattttcattatggtaaacaaatacaaagtagtt |
200 |
Q |
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| T |
33382391 |
ttcaaacaagtagtttattttggaaatcattttcaataactggtttatttttaaaaaaaaaaaagtgattttcattatggtaaacaaatacaaagtagtt |
33382490 |
T |
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| Q |
201 |
cctacttttttaaagaatctctaaaatttaatctcaagattatgtattgagtatcataatcacttttttataactctaacaaacagatccttaatctatg |
300 |
Q |
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| T |
33382491 |
cctacttttttaaagaatctctaaaatttaatctcaagattatgtattgagtatcataatcacttttttataactctaacaaacagatccttaatctatg |
33382590 |
T |
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| Q |
301 |
ttgtttttcaacatgagtgagtttttccctcatatgtgatgcgacaataccataagttaatttttatatgattgcagcatgtgaaatgtg |
390 |
Q |
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| T |
33382591 |
ttgtttttcaacatgagtgagtttttccctcatatgtgatgtgacaataccataagttaatttttatatgattgcagcatgtgaaatgtg |
33382680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 269
Target Start/End: Complemental strand, 38565649 - 38565550
Alignment:
| Q |
166 |
tgattttcattatggtaaacaaatacaaagtagttcctacttttttaaagaatctctaaaatttaatctcaagattatgtattgagtatcataatcactt |
265 |
Q |
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| T |
38565649 |
tgattttcattctgctaaacaaacacaaagctgcttctgctttttttaaaaatctctaaaaattaatctctaaat----tattgagtatcaaaatcactt |
38565554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 386
Target Start/End: Complemental strand, 12579324 - 12579282
Alignment:
| Q |
344 |
acaataccataagttaatttttatatgattgcagcatgtgaaa |
386 |
Q |
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| T |
12579324 |
acaataccatgggttcatttttatatgattgcagcatgtgaaa |
12579282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 194
Target Start/End: Original strand, 46663760 - 46663789
Alignment:
| Q |
165 |
gtgattttcattatggtaaacaaatacaaa |
194 |
Q |
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| T |
46663760 |
gtgattttcattatggtaaacaaatacaaa |
46663789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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