View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8963_low_27 (Length: 362)
Name: NF8963_low_27
Description: NF8963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8963_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 6343122 - 6343468
Alignment:
| Q |
1 |
attgtcactatttccttcatcgctcatatgaattagctgttaaaaagtaggttgtatcagactttcaaaatatcatatttaaacctaaaaaataaatcta |
100 |
Q |
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| T |
6343122 |
attgtgactatttccttcatcgctcatatgaattagctgttaaaaggtaggtcgtatcagactttcaaaatgtcatatttaaacctaaaaaataaattta |
6343221 |
T |
|
| Q |
101 |
tgatagaccgcatgctagacataggccttaaattttctgacagattatacttaggtcttgcaaaatttagttcgaccttgcctattatatttcaaaaatt |
200 |
Q |
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| T |
6343222 |
tgatagaccgcatgctagatacaggccttaaattttttaacagattatccttaagtcttgcaaaatttagttcgacc-tgcc-----tatttcaaaaatt |
6343315 |
T |
|
| Q |
201 |
gctcaaattcatttcataattgttcattcccttaattcatcggaagttaactgttgctcggtatttttcagcggcagttcagatcggtttattcattttt |
300 |
Q |
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| T |
6343316 |
gctcaaatctatttcataattgttcattcgcttaattcattggaagttaactgttgctcgatatttttcagcggcagttcagatcggtttattcattttt |
6343415 |
T |
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| Q |
301 |
taagttggtgtaaatagcaatatgtaccccatattcgcttcccatgatgtcca |
353 |
Q |
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| T |
6343416 |
taagttgatgtaaatagaaatatgtaccccatattcgcttcccatgacgtcca |
6343468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 40 - 239
Target Start/End: Original strand, 6342387 - 6342586
Alignment:
| Q |
40 |
ttaaaaagtaggttgtatcagactttcaaaatatcatatttaaacctaaaaaataaatctatgatagaccgcatgctagacataggccttaaattttctg |
139 |
Q |
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| T |
6342387 |
ttaaatagtaggtcatatcagatttttaaaatgtcacattcaaacctaaataataaacctacgacacgccacatgctagacattgatcttaaaaattttg |
6342486 |
T |
|
| Q |
140 |
acagattatacttaggtcttgcaaaatttagttcgaccttgcctattatatttcaaaaattgctcaaattcatttcataattgttcattcccttaattca |
239 |
Q |
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| T |
6342487 |
gtagattagacttagattttgcaaaatttagttcggcctaacctattatattttgaagattgctctaatccatgtcctaattattcatcccattaattca |
6342586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 155
Target Start/End: Original strand, 9710930 - 9711030
Alignment:
| Q |
55 |
tatcagactttcaaaatatcatatttaaacctaaaaaataaatctatgatagaccgcatgctagacataggccttaaattttctgacagattatacttag |
154 |
Q |
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| T |
9710930 |
tatcagactttaaaaatatcaaattcagttttaaaatataagtctatgataaaccgcatgttaaatttaggtcttaaattttttgacaaattagacttag |
9711029 |
T |
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| Q |
155 |
g |
155 |
Q |
| |
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| |
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|
| T |
9711030 |
g |
9711030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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