View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8963_low_31 (Length: 341)
Name: NF8963_low_31
Description: NF8963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8963_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 39 - 331
Target Start/End: Complemental strand, 43822116 - 43821824
Alignment:
| Q |
39 |
tcacaaataggggccaaaaatacaacatttgtgattttgatttataagtttgtttttatcataaaaattatctcggcattaaaacatatgcactgaagct |
138 |
Q |
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| T |
43822116 |
tcacaaataggggccaaaaatacaacatttgtgattttgttttaaaagtttgtttttatcataaaaattatctcggcattaaaacatatgcactgaagct |
43822017 |
T |
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| Q |
139 |
tcgtatgttatcttatcaatcttgaaaatactgaactgtcttcttgatatatataggctccagctgagaagagacatgttttcctcaatgagcttaagag |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43822016 |
tcgtatgttatcttatcaatcttgaaaatactgaactgtcttcttgatatatataggctccagctgagaagagacatgttttcctcaatgagcttaagag |
43821917 |
T |
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| Q |
239 |
ggtaggttccgaaggagcaagagtgttgcgcgaacttggaaacaaagtaaaaaagatggagaaactagacagaggagatttgctgtttgatgt |
331 |
Q |
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| T |
43821916 |
ggtaggttccgaaggagcaagagtgttgcgcgaacttggaaacaaagtaaaaaagatggagaaactagacagaggagatttgctgtttgatgt |
43821824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 189 - 320
Target Start/End: Complemental strand, 43814668 - 43814537
Alignment:
| Q |
189 |
atataggctccagctgagaagagacatgttttcctcaatgagcttaagagggtaggttccgaaggagcaagagtgttgcgcgaacttggaaacaaagtaa |
288 |
Q |
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| T |
43814668 |
atataggcaccagctgagaaaagacaggtttttcgcaatgagctgaagagggtaggttttgaaggagcaaaagtgttgcgcgaactaggaaacaaagtca |
43814569 |
T |
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| Q |
289 |
aaaagatggagaaactagacagaggagatttg |
320 |
Q |
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| T |
43814568 |
agaagatggagaaactagacaggggagatttg |
43814537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 187 - 320
Target Start/End: Complemental strand, 43829437 - 43829304
Alignment:
| Q |
187 |
atatataggctccagctgagaagagacatgttttcctcaatgagcttaagagggtaggttccgaaggagcaagagtgttgcgcgaacttggaaacaaagt |
286 |
Q |
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|||||||||| || ||||| |||||||| ||||| | ||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43829437 |
atatataggccccggctgataagagacaggtttttcacaaagagcttaagagggtatgttccgaaggagcacaagtgttgcgcgaacttggaaacaaagt |
43829338 |
T |
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| Q |
287 |
aaaaaagatggagaaactagacagaggagatttg |
320 |
Q |
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| T |
43829337 |
ccagaagatggagaagctggacaggagagatttg |
43829304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 43822140 - 43822185
Alignment:
| Q |
1 |
tactttaggataattccatgtcaatttcatagttttaatcacaaat |
46 |
Q |
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| T |
43822140 |
tactttaggataattccatgtcaatttcatagttttaatcacaaat |
43822185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 306
Target Start/End: Original strand, 31809345 - 31809460
Alignment:
| Q |
191 |
ataggctccagctgagaagagacatgttttcctcaatgagcttaagagggtaggttccgaaggagcaagagtgttgcgcgaacttggaaacaaagtaaaa |
290 |
Q |
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|||||||||||| ||||||||||| ||||||| ||| |||||||||| |||| |||| |||| | | ||| | || ||||| || |||||||| ||| |
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| T |
31809345 |
ataggctccagcggagaagagacaagttttccgcaaagagcttaagaaggtaagttctgaagcgactaaagttctacgtgaactcggtaacaaagttaaa |
31809444 |
T |
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| Q |
291 |
aagatggagaaactag |
306 |
Q |
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|||||||||||||||| |
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| T |
31809445 |
aagatggagaaactag |
31809460 |
T |
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