View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8963_low_37 (Length: 302)
Name: NF8963_low_37
Description: NF8963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8963_low_37 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 53491693 - 53491997
Alignment:
| Q |
1 |
cattaaaagcttacagttcgagtagaatagccccatgaattctgccaaaccattgctttctctcccttcatatcttcaaattttacctcgaacttttcag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491693 |
cattaaaagcttacagttcgagtagaatagccccatgaattctgccaaaccattgctttctctcccttcatatcttcaaattttacctcgaacttttcag |
53491792 |
T |
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| Q |
101 |
caaacttttgtctcaaacaatgggtagttgcaccttgtatcccacaaccagtgtttggaataaatgcctaggaaaattgaacaggaggaaaggcctcaaa |
200 |
Q |
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| T |
53491793 |
caaacttttgtctcaaacaatgggtagttgcaccttgtatcccacaaccagtgtttggaataaatgcctaggaaaattgaacaggaggaaaggcctcaaa |
53491892 |
T |
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| Q |
201 |
tactcattacagatgccaaagatgcatatattaaggcagattcctaaaataacta---gacggaatacctctgcatgtgcttcatcctctgttgcaaaag |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491893 |
tactcattacagatgccaaagatgcatatattaaggcagattcctaaaataactacttgacggaatacctctgcatgtgcttcatcctctgttgcaaaag |
53491992 |
T |
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| Q |
298 |
cactg |
302 |
Q |
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||||| |
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| T |
53491993 |
cactg |
53491997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 53499286 - 53499468
Alignment:
| Q |
1 |
cattaaaagcttacagttcgagtagaatagccccatgaattctgccaaaccattgctttctctcccttcatatcttcaaattttacctcgaacttttcag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
53499286 |
cattaaaagcttacagttcgagtagaatagccccatgagttctgccaaaccattgctttctctcccttcttatcttcaaattttacctcgaacttttcag |
53499385 |
T |
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| Q |
101 |
caaacttttgtctcaaacaatgggtagttgcaccttgtatcccacaaccagtgtttggaataaatgcctaggaaaattgaaca |
183 |
Q |
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| T |
53499386 |
caaacttttgtcccaagcaatgggtagttgcaccttgtatcccacaaccagtgtttggaataaatgcctaggaaaactgaaca |
53499468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 16070394 - 16070576
Alignment:
| Q |
1 |
cattaaaagcttacagttcgagtagaatagccccatgaattctgccaaaccattgctttctctcccttcatatcttcaaattttacctcgaacttttcag |
100 |
Q |
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|||| |||||||||||||||||||||| | |||||||| |||||||||||||||| ||||||| ||||| |||||||||| |||| ||| ||||| |||| |
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| T |
16070394 |
cattgaaagcttacagttcgagtagaaaacccccatgagttctgccaaaccattgttttctctaccttcttatcttcaaagtttatctcaaacttctcag |
16070493 |
T |
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| Q |
101 |
caaacttttgtctcaaacaatgggtagttgcaccttgtatcccacaaccagtgtttggaataaatgcctaggaaaattgaaca |
183 |
Q |
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| T |
16070494 |
caaacttttgtcccaaacaatgggtagctgcaccttgtatcccacgaccaatgtttggaataaaagcctagaaaaattgaaca |
16070576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 197 - 300
Target Start/End: Original strand, 53499888 - 53499994
Alignment:
| Q |
197 |
caaatactcattacagatgccaaagatgcatatattaaggcagattcctaaaataacta---gacggaatacctctgcatgtgcttcatcctctgttgca |
293 |
Q |
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|||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
53499888 |
caaagactcattacagatgccaaaaatgcatatagtaaggcagattcctaaaataactacttgatggaatacctctgcatgtgcttcatcctctgttgca |
53499987 |
T |
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| Q |
294 |
aaagcac |
300 |
Q |
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||||||| |
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| T |
53499988 |
aaagcac |
53499994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 215 - 302
Target Start/End: Original strand, 16071131 - 16071221
Alignment:
| Q |
215 |
gccaaagatgcatatattaaggcagattcctaaaataacta---gacggaatacctctgcatgtgcttcatcctctgttgcaaaagcactg |
302 |
Q |
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|||||| ||||| ||||||||||| |||||||||| ||||| || ||||||||||||||| |||||| ||||| | |||||||||||| |
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| T |
16071131 |
gccaaatatgcaaatattaaggcaaattcctaaaacaactacttgatggaatacctctgcatctgcttcttcctcagaagcaaaagcactg |
16071221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 6 - 174
Target Start/End: Complemental strand, 45355076 - 45354908
Alignment:
| Q |
6 |
aaagcttacagttcgagtagaatagccccatgaattctgccaaaccattgctttctctcccttcatatcttcaaattttacctcgaacttttcagcaaac |
105 |
Q |
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||||||||||||||||||| |||| |||| || |||||||| ||||||||||||||||||||| || |||| | |||| ||| ||| ||| |||||| |
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| T |
45355076 |
aaagcttacagttcgagtactataggcccacgagttctgccagaccattgctttctctcccttctcattttcatagtttatctcaaacattttagcaaaa |
45354977 |
T |
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| Q |
106 |
ttttgtctcaaacaatgggtagttgcaccttgtatcccacaaccagtgtttggaataaatgcctaggaa |
174 |
Q |
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||||||| ||||||||| | ||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
45354976 |
ttttgtcccaaacaatgagaagttgcaccttgtataccacgaccagtgtttggaataaatgcctaggaa |
45354908 |
T |
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