View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8963_low_4 (Length: 844)
Name: NF8963_low_4
Description: NF8963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8963_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 808; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 808; E-Value: 0
Query Start/End: Original strand, 1 - 828
Target Start/End: Original strand, 53492021 - 53492848
Alignment:
| Q |
1 |
acgactcctgcaatcaaaatttgaataagcaccctaaaatgggactataaacaagttccaatataaagtagatgtgcatgataaaaacaatatccaagac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53492021 |
acgactcctgcaatcaaaatttgaataagcaccctaaaatgggactataaacaagttccaatataaagtagatgtgcatgataaaaacaatatccaagac |
53492120 |
T |
|
| Q |
101 |
taattcaccaaacccaaacaaggtgaacacccattcaaaaagaaaactcaccgtaagatgaaaatccattcaaaaagaaaatgggcagaattttaaggca |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53492121 |
taattcaccaaacccaaacaaggtgaacacccattcaaaaagaaaactcaccgtaagatgaaaatccattcaaaaagaaaatgggcagaattttaaggca |
53492220 |
T |
|
| Q |
201 |
ttatgtaagacatataactacaatgcataatatcaatttttggaattgtttaagcctcttatataaagcttgaaagttttcattacgttacagcagccaa |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53492221 |
ttatgtaagacatataactacaatgcataatatcaatttttggaattgtttaagcctcttatataaagcttgaaagttttcattacgttacagcagccaa |
53492320 |
T |
|
| Q |
301 |
cacattgttataacatggaaaaaggaaaacatggtaaaaaagaaagtacctgatgaatggtgtgggatctccgaccacccatctaacagcattgcaccat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
53492321 |
cacattgttataacatggaaaaaggaaaagatggtaaaaaagaaagtacctgatgaatggtgtgggatctccgaccacccatctaacaacattgcaccat |
53492420 |
T |
|
| Q |
401 |
tgattaagtttcaaaggcaagtcacgatgtccccttatccacttagagtaatagggatacatgatagtttcactacttggacgaagagcaagatgagctt |
500 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53492421 |
tgattgagtttcaaaggcaagtcacgatgtccccttatccacttagagtaatagggatacatgatagtttcactacttggacgaagagcaagatgagctt |
53492520 |
T |
|
| Q |
501 |
ccaaatcagaatgtccagactttgttacccaagcaacctagaaaacaagcaagataatcagaaaaatactaataatatcctcaagggaagcaacgaagtt |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
53492521 |
ccaaatcagaatgtccagactttgttacccaagcaacctagaaaacaagcaagataatcagaaaaatactaataatgtcctcaagggaagcaacgaagtt |
53492620 |
T |
|
| Q |
601 |
gcatagattactataaagaaaattgttaacagaagtcattttaccacaaaaccaacatcagtaaaatgagaaacattgataaaataattaggaagcaaca |
700 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53492621 |
gcatagattactataaagaaaattgttaacagaagtcattttaccacaaaaccaacatcagtaaaatgagaaacattgataaaataattaggaagcaaca |
53492720 |
T |
|
| Q |
701 |
aatgatttaataatgcaatgattttcaaatatttaggagcaaaccaaacaaacttaaaaactctcaccacttgtttaaaaccgtcattatgggccttctc |
800 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
53492721 |
aatgatttaataatgcaatgattttcaaatatttaggagcaaaccaaacaaacttaaaaactctcaccacttgtttaaaaccttcattatgggccttctc |
53492820 |
T |
|
| Q |
801 |
ctttttcaaatggcagtctagcacaaac |
828 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
53492821 |
ctttttcaaatggcagtctagcacaaac |
53492848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 164 - 747
Target Start/End: Original strand, 53500118 - 53500687
Alignment:
| Q |
164 |
atccattcaaaaagaaaatgggcagaattttaaggcattatgtaagacatataactacaatgcataatatcaatttttggaattgtttaagcctcttata |
263 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||| |
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|
| T |
53500118 |
atccattcaaaaagaaaatgtgcagaactttaaggcattatgtaagacataaaactacaacgcataatatcaatttttagaattttttaa---------- |
53500207 |
T |
|
| Q |
264 |
taaagcttgaaagttttcattacgttacagcagccaacacattgttataacatggaaaaaggaaaacatggtaaaaaagaaagtacctgatgaatggtgt |
363 |
Q |
| |
|
|||||||||||||| |||||||||| || ||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||| |
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|
| T |
53500208 |
---agcttgaaagttttg-ttacgttacatcaaccaacacatcattataacatggaaaaaggaaaagatggtaaaaaaaaaagtacctgatgaacggtgt |
53500303 |
T |
|
| Q |
364 |
gggatctccgaccacccatctaacagcattgcaccattgattaagtttcaaaggcaagtcacgatgtccccttatccacttagagtaatagggatacatg |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53500304 |
gggatctccgaccacccatctaacagcattgcaccattgattaagtttcaaaggcaagtcacgatgtccccttatccacttagagtaatagggatacatg |
53500403 |
T |
|
| Q |
464 |
atagtttcactacttggacgaagagcaagatgagcttccaaatcagaatgtccagactttgttacccaagcaacctagaaaacaagcaagataatcagaa |
563 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53500404 |
atagtttcactacttggacgaagagcaagatgagcttccaaatcagactgtccagactttgttacccaagcaacctagaaaacaagcaagataatcagaa |
53500503 |
T |
|
| Q |
564 |
aaatactaataatatcctcaagggaagcaacgaagttgcatagattactataaagaaaattgttaacagaagtcattttaccacaaaaccaacatcagta |
663 |
Q |
| |
|
||||||||||||| |||| ||||||||| ||||||| |||||||| |||||||||||| |||| || ||||||||| ||| |||||| ||| |||| |
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|
| T |
53500504 |
aaatactaataatgtccttttgggaagcaatgaagttgtatagattattataaagaaaatccttaaaagcggtcattttaacacgaaaccatcattagta |
53500603 |
T |
|
| Q |
664 |
aaatgagaaacattgataaaataattaggaagcaacaaatgatttaataatgcaatgattttcaaatatttaggagcaaaccaa |
747 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53500604 |
aaatgagaaacattgataaaataattaggatccaacaaatgatttaataatgcaatgattttcaaatatttaggagcaaaccaa |
53500687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 321 - 747
Target Start/End: Original strand, 16071454 - 16071880
Alignment:
| Q |
321 |
aaaggaaaacatggtaaaaaagaaa--gtacctgatgaatggtgtgggatctccgaccacccatctaacagcattgcaccattgattaagtttcaaaggc |
418 |
Q |
| |
|
||||||||||||||||||||| ||| || |||||| |||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
16071454 |
aaaggaaaacatggtaaaaaaaaaaaagtgcctgattaatggtatgggatctccaaccacccatctaaccgcattgcaccattgattaagtttcaaaggc |
16071553 |
T |
|
| Q |
419 |
aagtcacgatgtccccttatccacttagagtaatagggatacatgatagtttcactacttggacgaagagcaagatgagcttccaaatcagaatgtccag |
518 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||| || |||| |||||||||| |||||| ||||||||||| |||||||||||| ||||||| |
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|
| T |
16071554 |
aagtcgcggtgtccccttatccacttagagtaatagggatatattatagcttcactacttagacgaacagcaagatgagtttccaaatcagactgtccag |
16071653 |
T |
|
| Q |
519 |
actttgttacccaagcaacctagaaaacaagca-agataatcagaaaaatactaataatatcctcaagggaagcaacgaagttgcatagattactataaa |
617 |
Q |
| |
|
|||||||||||||||||||||||||||| | || | |||||||||||||||| |||||||||||||| |||||| ||| || ||||| || |||||| |
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|
| T |
16071654 |
actttgttacccaagcaacctagaaaacgaacatatataatcagaaaaatacaaataatatcctcaaaaaaagcaatgaatttatatagactattataaa |
16071753 |
T |
|
| Q |
618 |
gaaaattgttaacagaagtcattttaccacaaaaccaacatcagtaaaatgagaaacattgataaaataattaggaagcaacaaatgatttaataatgca |
717 |
Q |
| |
|
|||||| ||||| || |||||||| | ||||||| || || | |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
16071754 |
gaaaatcgttaaaagcagtcatttcaacacaaaa-catca--acgaaaatgagaaacattgataaaataattaggaacaaacaaatgatttaataatgca |
16071850 |
T |
|
| Q |
718 |
atgattttcaaatatttaggagcaaaccaa |
747 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| |
|
|
| T |
16071851 |
atgattttcaaatatttaagagaaaaccaa |
16071880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 742 - 828
Target Start/End: Original strand, 16071916 - 16072002
Alignment:
| Q |
742 |
aaccaaacaaacttaaaaactctcaccacttgtttaaaaccgtcattatgggccttctcctttttcaaatggcagtctagcacaaac |
828 |
Q |
| |
|
|||| |||||||||||||||||||||| || | ||||||||||||| |||||||||||||||||||||||| || |||||||||||| |
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|
| T |
16071916 |
aacccaacaaacttaaaaactctcacctctggcttaaaaccgtcataatgggccttctcctttttcaaatgacattctagcacaaac |
16072002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 53500020 - 53500085
Alignment:
| Q |
1 |
acgactcctgcaatcaaaatttgaataagcaccctaaaatgggactataaacaagttccaatataaa |
67 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||| ||||||||| |
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|
| T |
53500020 |
acgactcctgcaatcaaaatttgtataagcaccc-aaaatgggactatgaacaagtttcaatataaa |
53500085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 742 - 828
Target Start/End: Original strand, 53500713 - 53500799
Alignment:
| Q |
742 |
aaccaaacaaacttaaaaactctcaccacttgtttaaaaccgtcattatgggccttctcctttttcaaatggcagtctagcacaaac |
828 |
Q |
| |
|
|||| |||| ||||||||||||||||| ||||||||||||| ||||| |||| |||||||||||||| |||||||||||||| |
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| T |
53500713 |
aacctaacatacttaaaaactctcacctcttgtttaaaaccactgttatgagcctcttcctttttcaaatgagagtctagcacaaac |
53500799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 16071296 - 16071337
Alignment:
| Q |
52 |
caagttccaatataaagtagatgtgcatgataaaaacaatat |
93 |
Q |
| |
|
||||||| |||| ||||||||||||| ||||||||||||||| |
|
|
| T |
16071296 |
caagttctaatacaaagtagatgtgcgtgataaaaacaatat |
16071337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 1e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 349 - 539
Target Start/End: Complemental strand, 45353706 - 45353516
Alignment:
| Q |
349 |
cctgatgaatggtgtgggatctccgaccacccatctaacagcattgcaccattgattaagtttcaaaggcaagtcacgatgtccccttatccacttagag |
448 |
Q |
| |
|
|||||||||||||||||||| | || | ||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
45353706 |
cctgatgaatggtgtgggattgctgaactcccatctaacaacattgcaccactgattaagcttcaaaggcaagtcacgatgtccccttatccacttagag |
45353607 |
T |
|
| Q |
449 |
taatagggatacatgatagtttcactacttggacgaagagcaagatgagcttccaaatcagaatgtccagactttgttacccaagcaacct |
539 |
Q |
| |
|
|| || |||||||| | |||||||||| ||||||||| ||||| | || || |||||||| | |||||| || || ||||||||||||| |
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|
| T |
45353606 |
tagtaaggatacataacagtttcactagttggacgaatagcaataggaatctctaaatcagattctccagatttggtcacccaagcaacct |
45353516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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