View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8963_low_40 (Length: 287)
Name: NF8963_low_40
Description: NF8963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8963_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 9 - 271
Target Start/End: Original strand, 17467860 - 17468128
Alignment:
| Q |
9 |
agcagagacaacataatgaagcaaaataaaatgaggat----ggttgactggatttcttgaacgcaaaatacgatggatccaagatggtggtgaaagagt |
104 |
Q |
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| T |
17467860 |
agcagaggcaacataatgaagcaaaataaaatgaggagtgacggttgactggatttcttgaacacaaaatacgatggatccaagatggtggtggaagagt |
17467959 |
T |
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| Q |
105 |
gattgttcgatgtagaattccaatcgtttatgtgggctgtgaatgctgtgttcattgttttctc--aggatttagatgtaaggagttgtttttaaccctt |
202 |
Q |
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|||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||| | |
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| T |
17467960 |
gattgttcgatgtagaataccaatcgtttatgtgggctgcgaatgctgcgttcattgttttctcaaaggatttacatgtaaggagttgtttttaacccct |
17468059 |
T |
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| Q |
203 |
tttcttaattatgtgatttaggaaactttgtttgaatttgtttatggcgtatccaattagggatttaag |
271 |
Q |
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| T |
17468060 |
tttcttaattatgtgatttaggaaactttgtttgaatttgtttatggcgtatccaattagggatttaag |
17468128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 10791648 - 10791607
Alignment:
| Q |
80 |
ggatccaagatggtggtgaaagagtgattgttcgatgtagaa |
121 |
Q |
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| T |
10791648 |
ggatcgaagacggtggtgaaagggtgattgttcgatgtagaa |
10791607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 220
Target Start/End: Original strand, 25873118 - 25873289
Alignment:
| Q |
46 |
tggttgactggatttcttgaacgcaaaatacgatggatccaagatggtggtgaaagagtgattgttcgatgtagaattccaatcgtttatgtgggctgtg |
145 |
Q |
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| T |
25873118 |
tggttgacttgatctcttggactcaaaatttgacggatcgaagacggtggtgaaagggtgattgttcgatgtagaaaatcaa-----tatgtgggttgcg |
25873212 |
T |
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| Q |
146 |
aatgctgtgttcattgttttctc--aggatttagatgtaaggagttgtttttaaccctttttcttaattatgtgatt |
220 |
Q |
| |
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|||| |||||||||| ||||||| || ||||| |||||||||| || |||||||| ||||| |||||||| ||||| |
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| T |
25873213 |
aatgttgtgttcattattttctcaaagaatttacatgtaaggagatgcttttaacctttttttttaattatatgatt |
25873289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 205
Target Start/End: Original strand, 25874385 - 25874541
Alignment:
| Q |
46 |
tggttgactggatttcttgaacgcaaaatacgatggatccaagatggtggtgaaagagtgattgttcgatgtagaattccaatcgtttatgtgggctgtg |
145 |
Q |
| |
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| T |
25874385 |
tggttgacttgatctcttggactcaaaatttgacggatcgaagacggtggtgaaagggtgattgttcgatgtagaaaatcaa-----tatgtgggttgcg |
25874479 |
T |
|
| Q |
146 |
aatgctgtgttcattgttttctc--aggatttagatgtaaggagttgtttttaacccttttt |
205 |
Q |
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|||| |||||||||| ||||||| || ||||| |||||||||||| |||||||| ||||| |
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| T |
25874480 |
aatgttgtgttcattattttctcaaagaatttacatgtaaggagttacttttaacctttttt |
25874541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 199
Target Start/End: Original strand, 4010721 - 4010871
Alignment:
| Q |
46 |
tggttgactggatttcttgaacgcaaaatacgatggatccaagatggtggtgaaagagtgattgttcgatgtagaattccaatcgtttatgtgggctgtg |
145 |
Q |
| |
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||||||||| ||||||||| || |||||| || |||| |||| ||||||||||| |||| |||||||||||||| |||| |||| ||| || | |
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| T |
4010721 |
tggttgacttgatttcttggactcaaaatctgacggattgaagacggtggtgaaagggtgactgttcgatgtagaa----aatc-agtatgcgggttgcg |
4010815 |
T |
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| Q |
146 |
aatgctgtgttcattgttttctc--aggatttagatgtaaggagttgtttttaacc |
199 |
Q |
| |
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|||| |||||||||| ||||||| |||||||| |||||||||||| |||||||| |
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| T |
4010816 |
aatgttgtgttcattattttctcaaaggatttacatgtaaggagttacttttaacc |
4010871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 199
Target Start/End: Original strand, 2273389 - 2273539
Alignment:
| Q |
46 |
tggttgactggatttcttgaacgcaaaatacgatggatccaagatggtggtgaaagagtgattgttcgatgtagaattccaatcgtttatgtgggctgtg |
145 |
Q |
| |
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||||||||| ||||||||| || |||||| || |||| |||| ||||||||||| |||| |||||||||||||| |||| |||||||| || | |
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| T |
2273389 |
tggttgacttgatttcttggactcaaaatctgacggattgaagacggtggtgaaagggtgactgttcgatgtagaa----aatc-agtatgtgggttgcg |
2273483 |
T |
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| Q |
146 |
aatgctgtgttcattgttttctc--aggatttagatgtaaggagttgtttttaacc |
199 |
Q |
| |
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|||| |||||||||| ||||||| |||||||| |||||||||||| |||||||| |
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| T |
2273484 |
aatgttgtgttcattattttctcaaaggatttacatgtaaggagttacttttaacc |
2273539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 199
Target Start/End: Original strand, 39344876 - 39345026
Alignment:
| Q |
46 |
tggttgactggatttcttgaacgcaaaatacgatggatccaagatggtggtgaaagagtgattgttcgatgtagaattccaatcgtttatgtgggctgtg |
145 |
Q |
| |
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||||||||| ||||||||| || |||||| || |||| |||| ||||||||||| |||| |||||||||||||| |||| |||||||| || | |
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| T |
39344876 |
tggttgacttgatttcttggactcaaaatctgacggattgaagacggtggtgaaagggtgactgttcgatgtagaa----aatc-agtatgtgggttgcg |
39344970 |
T |
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| Q |
146 |
aatgctgtgttcattgttttctc--aggatttagatgtaaggagttgtttttaacc |
199 |
Q |
| |
|
|||| |||||||||| ||||||| |||||||| |||||||||||| |||||||| |
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|
| T |
39344971 |
aatgttgtgttcattattttctcaaaggatttacatgtaaggagttacttttaacc |
39345026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 199
Target Start/End: Original strand, 35346328 - 35346478
Alignment:
| Q |
46 |
tggttgactggatttcttgaacgcaaaatacgatggatccaagatggtggtgaaagagtgattgttcgatgtagaattccaatcgtttatgtgggctgtg |
145 |
Q |
| |
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||||||||| ||||||||| || |||||| || |||| |||| ||||||||||| |||| |||||||||||||| |||| |||| ||| || | |
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| T |
35346328 |
tggttgacttgatttcttggactcaaaatctgacggattgaagacggtggtgaaagggtgactgttcgatgtagaa----aatc-agtatgcgggttgcg |
35346422 |
T |
|
| Q |
146 |
aatgctgtgttcattgttttctc--aggatttagatgtaaggagttgtttttaacc |
199 |
Q |
| |
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|||| |||||||||| ||||||| |||||||| |||||||||||| |||||||| |
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|
| T |
35346423 |
aatgttgtgttcattattttctcaaaggatttacatgtaaggagttacttttaacc |
35346478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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