View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8963_low_42 (Length: 257)
Name: NF8963_low_42
Description: NF8963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8963_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 43847844 - 43848033
Alignment:
| Q |
16 |
attataagttcttttgcaaaattatacccacttcaatggttaaagtgattttgctcggtttnnnnnnntttggacaacttttttaaattttgttgaaccg |
115 |
Q |
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| T |
43847844 |
attataagttcttttgcaaaactatacccacttcaatggttaaagtgattttgctcggtttaaaaaaatttggacaacttttttaaattttgttgaaccg |
43847943 |
T |
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| Q |
116 |
gtagtttaaattgtctaatcaaacaagattgatcatgtcgatttgactataaaaacactatgaagtatgaaactttgataaaatagtaag |
205 |
Q |
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| T |
43847944 |
gtagtttaaattgtctaatcaaacaagatttatcatgtcgatttgactataaaaacaccatgaagtatgaaactttgataaaatagtaag |
43848033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 120 - 257
Target Start/End: Original strand, 43850357 - 43850492
Alignment:
| Q |
120 |
tttaaattgtctaatcaaacaagattgatcatgtcgatttgactataaaaacactatgaagtatgaaactttgataaaatagtaagttttcaaattcatt |
219 |
Q |
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| T |
43850357 |
tttaaattgtctgatcaaacatgactgatcctgccgatttggctataaaaacacta--aaatatgaacctttgataaaatagtaatttttcaaattcatt |
43850454 |
T |
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| Q |
220 |
agttttgtgtttttatgggacacgatttaaattccaac |
257 |
Q |
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| T |
43850455 |
agttttgtgtttttaaaagacacaatttaaatttcaac |
43850492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 202 - 257
Target Start/End: Original strand, 43849374 - 43849429
Alignment:
| Q |
202 |
taagttttcaaattcattagttttgtgtttttatgggacacgatttaaattccaac |
257 |
Q |
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| T |
43849374 |
taagttttcaaattcattagttttgtgtttttatgggacacgatttaaattccaac |
43849429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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