View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8963_low_44 (Length: 249)

Name: NF8963_low_44
Description: NF8963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8963_low_44
NF8963_low_44
[»] chr4 (4 HSPs)
chr4 (112-232)||(24126947-24127067)
chr4 (148-232)||(24685912-24685996)
chr4 (1-40)||(24126847-24126886)
chr4 (1-40)||(24685811-24685850)
[»] chr2 (2 HSPs)
chr2 (112-232)||(25649172-25649291)
chr2 (1-40)||(25649352-25649391)
[»] scaffold0471 (2 HSPs)
scaffold0471 (112-232)||(11550-11671)
scaffold0471 (1-40)||(11450-11489)
[»] chr6 (2 HSPs)
chr6 (112-232)||(9306194-9306313)
chr6 (1-40)||(9306374-9306413)
[»] chr1 (2 HSPs)
chr1 (148-232)||(49383580-49383664)
chr1 (1-40)||(49383724-49383763)


Alignment Details
Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 112 - 232
Target Start/End: Original strand, 24126947 - 24127067
Alignment:
Q  112 cttgtactgttcataactataaaatgggttgtttgattcccaattctaacctaaatttgttgtttgatttgattccatttttattgtttatgattgattc 211  Q
    |||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24126947 cttgtactgttcatacttagaaaatgggttgtttgattcccaattctaacctaaatttgttgtttgatttgattccatttttattgtttatgattgattc 24127046  T
Q  212 gatccgaaaatgagttgtttg 232  Q
    ||||| |||||||||||||||    
T  24127047 gatccaaaaatgagttgtttg 24127067  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 24685912 - 24685996
Alignment:
Q  148 ttcccaattctaacctaaatttgttgtttgatttgattccatttttattgtttatgattgattcgatccgaaaatgagttgtttg 232  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  24685912 ttcccaattctaacctaaatttgttgtttgatttgattccatttgtattgtttatgattgattcgatccgaaaatgaattgtttg 24685996  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 24126847 - 24126886
Alignment:
Q  1 agagagaagagggatgaacgttgttgctggaattaggaag 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  24126847 agagagaagagggatgaacgttgttgctggaattaggaag 24126886  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 24685811 - 24685850
Alignment:
Q  1 agagagaagagggatgaacgttgttgctggaattaggaag 40  Q
    |||||||||||||||||| |||||||||||||| ||||||    
T  24685811 agagagaagagggatgaatgttgttgctggaatcaggaag 24685850  T

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Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 112 - 232
Target Start/End: Complemental strand, 25649291 - 25649172
Alignment:
Q  112 cttgtactgttcataactataaaatgggttgtttgattcccaattctaacctaaatttgttgtttgatttgattccatttttattgtttatgattgattc 211  Q
    ||||||||||||||| ||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25649291 cttgtactgttcatacctagaaaatgggttatt-gattcccaattctaacctaaatttgttgtttgatttgattccatttttattgtttatgattgattc 25649193  T
Q  212 gatccgaaaatgagttgtttg 232  Q
    |||||||||||||||||||||    
T  25649192 gatccgaaaatgagttgtttg 25649172  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 25649391 - 25649352
Alignment:
Q  1 agagagaagagggatgaacgttgttgctggaattaggaag 40  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  25649391 agagagtagagggatgaacgttgttgctggaattaggaag 25649352  T

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Target: scaffold0471 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 112 - 232
Target Start/End: Original strand, 11550 - 11671
Alignment:
Q  112 cttgtactgttcataactataaaatgggttgtttgattcccaattctaacctaaatttgttgtttgatttgattcca-tttttattgtttatgattgatt 210  Q
    |||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  11550 cttgtactgttcatacttagaaaatgggttgtttgattcccaattctaacctaaatttgttgtttgatttgattccattttttattgtttatgattgatt 11649  T
Q  211 cgatccgaaaatgagttgtttg 232  Q
    |||||| |||||||||||||||    
T  11650 cgatccaaaaatgagttgtttg 11671  T

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Target: scaffold0471; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 11450 - 11489
Alignment:
Q  1 agagagaagagggatgaacgttgttgctggaattaggaag 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  11450 agagagaagagggatgaacgttgttgctggaattaggaag 11489  T

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Target: chr6 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 112 - 232
Target Start/End: Complemental strand, 9306313 - 9306194
Alignment:
Q  112 cttgtactgttcataactataaaatgggttgtttgattcccaattctaacctaaatttgttgtttgatttgattccatttttattgtttatgattgattc 211  Q
    ||||||||||| ||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9306313 cttgtactgtt-atacctagaaaatgggttgtttgattcccaattttaacctaaatttgttgtttgatttgattccatttttattgtttatgattgattc 9306215  T
Q  212 gatccgaaaatgagttgtttg 232  Q
    ||||| |||||||||||||||    
T  9306214 gatccaaaaatgagttgtttg 9306194  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 9306413 - 9306374
Alignment:
Q  1 agagagaagagggatgaacgttgttgctggaattaggaag 40  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  9306413 agagagaagagggatgaacgttgttgctcgaatcaggaag 9306374  T

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Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 148 - 232
Target Start/End: Complemental strand, 49383664 - 49383580
Alignment:
Q  148 ttcccaattctaacctaaatttgttgtttgatttgattccatttttattgtttatgattgattcgatccgaaaatgagttgtttg 232  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| | |||||||    
T  49383664 ttcccaattctaacctaaatttgttgtttgatttgattccatttgtattgtttatgattgatttgatccgaaaataatttgtttg 49383580  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 49383763 - 49383724
Alignment:
Q  1 agagagaagagggatgaacgttgttgctggaattaggaag 40  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  49383763 agagagaagagggatgaacgttgttgctggaatcaggaag 49383724  T

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