View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8963_low_49 (Length: 218)
Name: NF8963_low_49
Description: NF8963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8963_low_49 |
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| [»] scaffold0295 (1 HSPs) |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 9e-94; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 23 - 200
Target Start/End: Original strand, 51457692 - 51457869
Alignment:
| Q |
23 |
gccggattattgtgtaaagcctgacatggggccaagaacatatattgcttatggatttgctcagaatctcggacgtggtgattctgtgactaagctccat |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
51457692 |
gccggattattgtgtaaagcctgacatggggccaagaacatatattgcttatggatttgctcagaatctcggacgcggtgattctgtgactaagctccat |
51457791 |
T |
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| Q |
123 |
tgtgatgtgtctgatgcagtatgcttcaaaacctttttatatttctggcatgtttttccagaatctcttaattatttg |
200 |
Q |
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| T |
51457792 |
tgtgatgtgtctgatgcagtatgcttcaaaacctttttatatttctggcatgtttttccagaatctcttaattatttg |
51457869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 37 - 151
Target Start/End: Original strand, 51482350 - 51482464
Alignment:
| Q |
37 |
taaagcctgacatggggccaagaacatatattgcttatggatttgctcagaatctcggacgtggtgattctgtgactaagctccattgtgatgtgtctga |
136 |
Q |
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||||||| |||||||| |||| |||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||| ||| || ||||||| |
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| T |
51482350 |
taaagccagacatgggcccaaaaacatatattgcttatggatttgctcaggagcttggacgtggtgattctgtgactaagctccactgtaatatgtctga |
51482449 |
T |
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| Q |
137 |
tgcagtatgcttcaa |
151 |
Q |
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||||||||| ||||| |
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| T |
51482450 |
tgcagtatgattcaa |
51482464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 40 - 151
Target Start/End: Complemental strand, 30205114 - 30205003
Alignment:
| Q |
40 |
agcctgacatggggccaagaacatatattgcttatggatttgctcagaatctcggacgtggtgattctgtgactaagctccattgtgatgtgtctgatgc |
139 |
Q |
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|||| |||||||| |||| |||||||||||||||||||||||||||| | || || || |||||||||||||||||||||||||||||| |||| ||||| |
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| T |
30205114 |
agccagacatgggcccaaaaacatatattgcttatggatttgctcaggagcttgggcggggtgattctgtgactaagctccattgtgatatgtcagatgc |
30205015 |
T |
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| Q |
140 |
agtatgcttcaa |
151 |
Q |
| |
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|||||||||||| |
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| T |
30205014 |
agtatgcttcaa |
30205003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 37 - 151
Target Start/End: Original strand, 51499051 - 51499165
Alignment:
| Q |
37 |
taaagcctgacatggggccaagaacatatattgcttatggatttgctcagaatctcggacgtggtgattctgtgactaagctccattgtgatgtgtctga |
136 |
Q |
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||||||| || ||||| |||| ||||||||||||||||||||||| |||| | || || || |||||||||||||||||||| ||||||||| ||||||| |
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| T |
51499051 |
taaagccagatatgggaccaaaaacatatattgcttatggatttgatcaggaacttgggcggggtgattctgtgactaagcttcattgtgatatgtctga |
51499150 |
T |
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| Q |
137 |
tgcagtatgcttcaa |
151 |
Q |
| |
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||||||||||||||| |
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| T |
51499151 |
tgcagtatgcttcaa |
51499165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 151
Target Start/End: Original strand, 51440260 - 51440310
Alignment:
| Q |
101 |
tgattctgtgactaagctccattgtgatgtgtctgatgcagtatgcttcaa |
151 |
Q |
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||||| ||||||||||||||||| |||||||| |||||||||| ||||||| |
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| T |
51440260 |
tgattatgtgactaagctccattttgatgtgtgtgatgcagtaagcttcaa |
51440310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 8e-51; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 23 - 160
Target Start/End: Original strand, 43162016 - 43162153
Alignment:
| Q |
23 |
gccggattattgtgtaaagcctgacatggggccaagaacatatattgcttatggatttgctcagaatctcggacgtggtgattctgtgactaagctccat |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||| || ||||| ||||||||||||||| |
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| T |
43162016 |
gccggattattgtgtaaagcctgacatggggccaagaacatatattgcttatggatttcctcaggatcttggacgcggggattccgtgactaagctccat |
43162115 |
T |
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| Q |
123 |
tgtgatgtgtctgatgcagtatgcttcaaaaccttttt |
160 |
Q |
| |
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||| |||||| |||||||||||||||| |||||||||| |
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| T |
43162116 |
tgtaatgtgtttgatgcagtatgcttcgaaaccttttt |
43162153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 37 - 148
Target Start/End: Original strand, 27397694 - 27397805
Alignment:
| Q |
37 |
taaagcctgacatggggccaagaacatatattgcttatggatttgctcagaatctcggacgtggtgattctgtgactaagctccattgtgatgtgtctga |
136 |
Q |
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||||||| |||||||| |||| |||||||||||||||||||||||||||| | || ||||| |||||||| ||||||| ||||||||||||| ||||||| |
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| T |
27397694 |
taaagccagacatgggaccaaaaacatatattgcttatggatttgctcaggagcttggacggggtgattcagtgactaggctccattgtgatatgtctga |
27397793 |
T |
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| Q |
137 |
tgcagtatgctt |
148 |
Q |
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|||||||||||| |
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| T |
27397794 |
tgcagtatgctt |
27397805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 49 - 151
Target Start/End: Complemental strand, 20867643 - 20867541
Alignment:
| Q |
49 |
tggggccaagaacatatattgcttatggatttgctcagaatctcggacgtggtgattctgtgactaagctccattgtgatgtgtctgatgcagtatgctt |
148 |
Q |
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|||| |||| |||||||||||||||||||||| |||| | || || || |||||||||||||||||||| ||||||||| ||||||||| |||||| || |
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| T |
20867643 |
tgggaccaaaaacatatattgcttatggatttcatcaggagcttgggcggggtgattctgtgactaagctacattgtgatatgtctgatgtagtatgttt |
20867544 |
T |
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| Q |
149 |
caa |
151 |
Q |
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||| |
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| T |
20867543 |
caa |
20867541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0295 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0295
Description:
Target: scaffold0295; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 37 - 151
Target Start/End: Complemental strand, 6905 - 6791
Alignment:
| Q |
37 |
taaagcctgacatggggccaagaacatatattgcttatggatttgctcagaatctcggacgtggtgattctgtgactaagctccattgtgatgtgtctga |
136 |
Q |
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||||||| ||||||||||||| | |||| |||||||||||||||||| || | || ||| ||||||||||||||| ||||||||||| || |||| || |
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| T |
6905 |
taaagccagacatggggccaaaagcatacattgcttatggatttgctaaggagcttggatttggtgattctgtgacaaagctccattgcgacatgtcgga |
6806 |
T |
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| Q |
137 |
tgcagtatgcttcaa |
151 |
Q |
| |
|
||||||||||||||| |
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| T |
6805 |
tgcagtatgcttcaa |
6791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 45 - 149
Target Start/End: Original strand, 4299623 - 4299727
Alignment:
| Q |
45 |
gacatggggccaagaacatatattgcttatggatttgctcagaatctcggacgtggtgattctgtgactaagctccattgtgatgtgtctgatgcagtat |
144 |
Q |
| |
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|||||||| |||| |||||||||||||||||||||| ||||| | || || | ||||||||||| ||||||||| |||||||| ||||| ||||||||| |
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| T |
4299623 |
gacatgggcccaaaaacatatattgcttatggattttctcaggagcttgggtggggtgattctgtcactaagctctattgtgatatgtctcatgcagtat |
4299722 |
T |
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| Q |
145 |
gcttc |
149 |
Q |
| |
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||||| |
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| T |
4299723 |
gcttc |
4299727 |
T |
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Target: scaffold0020 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 60 - 151
Target Start/End: Complemental strand, 136292 - 136201
Alignment:
| Q |
60 |
acatatattgcttatggatttgctcagaatctcggacgtggtgattctgtgactaagctccattgtgatgtgtctgatgcagtatgcttcaa |
151 |
Q |
| |
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|||||| |||||||||||||| || || | || || || |||||||| ||||| ||||||||||||||| ||||||||| |||||| ||||| |
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| T |
136292 |
acatattttgcttatggattttctgaggagcttgggcggggtgattccgtgacaaagctccattgtgatatgtctgatgtagtatgtttcaa |
136201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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