View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8963_low_52 (Length: 210)
Name: NF8963_low_52
Description: NF8963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8963_low_52 |
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| [»] chr8 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 15 - 210
Target Start/End: Original strand, 7329161 - 7329356
Alignment:
| Q |
15 |
gaaacaaagactctttgaattgttggctacttgcacaccacaaaacccaaatcctttcgccaattttgataaaaccagcaatgaatatcggtattgccaa |
114 |
Q |
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| T |
7329161 |
gaaacaaagactctttgaattgttggctacttgcacaccacaaaacccaaatcctttctccgattttgataaaaccggcaatgaatatcggtactgccaa |
7329260 |
T |
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| Q |
115 |
aatgttaagatcagcatttgtccatgatctaagaaaggttaaaaatgcaaccacgacttgtccaacataagtaaccaaacgcctactccaaagtgc |
210 |
Q |
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| T |
7329261 |
aatgttaagatcagcatttgtccatgatctaagaaaggttaaaaatgcaaccacaacttgtccgatataagtaaccaaacgcctactccaaagtgc |
7329356 |
T |
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Target: chr1 (Bit Score: 116; Significance: 3e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 15 - 210
Target Start/End: Original strand, 6806976 - 6807171
Alignment:
| Q |
15 |
gaaacaaagactctttgaattgttggctacttgcacaccacaaaacccaaatcctttcgccaattttgataaaaccagcaatgaatatcggtattgccaa |
114 |
Q |
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||||||||||||| ||||| |||||||||||||||| |||||||||| |||| || || | |||||||||||||| |||||||||||| |||||||||| |
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| T |
6806976 |
gaaacaaagactccttgaagtgttggctacttgcacgccacaaaaccaaaattctctcacaaattttgataaaactagcaatgaatattggtattgccag |
6807075 |
T |
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| Q |
115 |
aatgttaagatcagcatttgtccatgatctaagaaaggttaaaaatgcaaccacgacttgtccaacataagtaaccaaacgcctactccaaagtgc |
210 |
Q |
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| T |
6807076 |
aatgttaagaccagtatttgtccatgatcggagaaagattaaaattgcaaccgcaacctgtccaacataagtaaccaaacgcctactccaaagtgc |
6807171 |
T |
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