View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8963_low_53 (Length: 210)
Name: NF8963_low_53
Description: NF8963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8963_low_53 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 15 - 210
Target Start/End: Original strand, 7329161 - 7329356
Alignment:
| Q |
15 |
gaaacaaagactctttgaattgttggctacttgcacaccacaaaacccaaatcctttcgccaattttgataaaaccagcaatgaatatcggtattgccaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
7329161 |
gaaacaaagactctttgaattgttggctacttgcacaccacaaaacccaaatcctttctccgattttgataaaaccggcaatgaatatcggtactgccaa |
7329260 |
T |
|
| Q |
115 |
aatgttaagatcagcatttgtccatgatctaagaaaggttaaaaatgcaaccacgacttgtccaacataagtaaccaaacgcctactccaaagtgc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
7329261 |
aatgttaagatcagcatttgtccatgatctaagaaaggttaaaaatgcaaccacaacttgtccgatataagtaaccaaacgcctactccaaagtgc |
7329356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 116; Significance: 3e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 15 - 210
Target Start/End: Original strand, 6806976 - 6807171
Alignment:
| Q |
15 |
gaaacaaagactctttgaattgttggctacttgcacaccacaaaacccaaatcctttcgccaattttgataaaaccagcaatgaatatcggtattgccaa |
114 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||| |||||||||| |||| || || | |||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
6806976 |
gaaacaaagactccttgaagtgttggctacttgcacgccacaaaaccaaaattctctcacaaattttgataaaactagcaatgaatattggtattgccag |
6807075 |
T |
|
| Q |
115 |
aatgttaagatcagcatttgtccatgatctaagaaaggttaaaaatgcaaccacgacttgtccaacataagtaaccaaacgcctactccaaagtgc |
210 |
Q |
| |
|
|||||||||| ||| |||||||||||||| |||||| |||||| ||||||| | || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6807076 |
aatgttaagaccagtatttgtccatgatcggagaaagattaaaattgcaaccgcaacctgtccaacataagtaaccaaacgcctactccaaagtgc |
6807171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University