View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8964_high_1 (Length: 465)
Name: NF8964_high_1
Description: NF8964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8964_high_1 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 421; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 16 - 465
Target Start/End: Original strand, 39620542 - 39620991
Alignment:
| Q |
16 |
agataccgaagcaagtcatttatttatatgagaatataagtaaagactaaagaaaaccacttgcctgaccaaaagcatatgccagaggagaatacattct |
115 |
Q |
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| T |
39620542 |
agataccgaagcaagtcatttatttatatgagaatataagtaaagactaaagaaaaccacttgcctgaccaaaagcatatgccagtggagaatacattct |
39620641 |
T |
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| Q |
116 |
ggcagcattttccctatagaaaactgctctctctgcagtcaccactgcttgcacagaaccagcattcttaatgccaataagtagaatagtaatcgacatt |
215 |
Q |
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| T |
39620642 |
ggcagcattttccctatagaaaactgctctctctgcagtcaccactgcttgcacagaaccagcattcttaatgccaataagtagaatagtaatcgacatt |
39620741 |
T |
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| Q |
216 |
gagccaatggagttaaggagatcttgtctcttgtcactgtagttgattgaagtgaacctaatcttagaaagnnnnnnntagaagcaaactcatattttaa |
315 |
Q |
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| T |
39620742 |
gagccaatggagttaaggagatcttgtctcttttcactgtagttgattgaagtgaacctaatcttagaaagaaaaaaatagaagcaaactcatattttaa |
39620841 |
T |
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| Q |
316 |
aggcataacagtttctagttttcggcttacattttggagccaaggccataaaacacgctcccgaaaaagatagaggcaacggctgtgaagagaaatctta |
415 |
Q |
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| T |
39620842 |
aggcataacagtttctagttttcggcttacattttggagccaaggccataaaacacgctcccgaaaaagatagaggcaacggctgtgaagagaaatctta |
39620941 |
T |
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| Q |
416 |
atgcattgtatcgcggattccgccagtaagaccaatgttgtttccataag |
465 |
Q |
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| T |
39620942 |
atgcattgtatcgcggattccgccagtaagaccaatgttgtttccataag |
39620991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 399 - 464
Target Start/End: Original strand, 39573591 - 39573656
Alignment:
| Q |
399 |
tgtgaagagaaatcttaatgcattgtatcgcggattccgccagtaagaccaatgttgtttccataa |
464 |
Q |
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| T |
39573591 |
tgtgaagataaaccttattgaattgtacaacggattgcgccagtaagaccaatgttgtttccataa |
39573656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 399 - 464
Target Start/End: Original strand, 39588098 - 39588163
Alignment:
| Q |
399 |
tgtgaagagaaatcttaatgcattgtatcgcggattccgccagtaagaccaatgttgtttccataa |
464 |
Q |
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| T |
39588098 |
tgtgaagagaaaccttatggcattgtacagagggttgcgccagtaagaccaatgttgtttccataa |
39588163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 430 - 464
Target Start/End: Original strand, 1083597 - 1083631
Alignment:
| Q |
430 |
ggattccgccagtaagaccaatgttgtttccataa |
464 |
Q |
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| T |
1083597 |
ggattgcgccagtaagaccaatgttgtttccataa |
1083631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 430 - 464
Target Start/End: Original strand, 39546290 - 39546324
Alignment:
| Q |
430 |
ggattccgccagtaagaccaatgttgtttccataa |
464 |
Q |
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| T |
39546290 |
ggattgcgccagtaagaccaatgttgtttccataa |
39546324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 463
Target Start/End: Original strand, 2896130 - 2896171
Alignment:
| Q |
422 |
tgtatcgcggattccgccagtaagaccaatgttgtttccata |
463 |
Q |
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| T |
2896130 |
tgtatggcggattgcgccagtatgaccaatgttgtttccata |
2896171 |
T |
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