View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8964_high_2 (Length: 423)
Name: NF8964_high_2
Description: NF8964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8964_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 147 - 346
Target Start/End: Original strand, 5901352 - 5901551
Alignment:
| Q |
147 |
ccaatagcgaaaatgaatgaaaacaagaattaacaaaaagggtagcggaaaaacctcgttgatgggtgaattagcgatgaaagaagaagcttcgatccga |
246 |
Q |
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| T |
5901352 |
ccaatagcgaaaatgaatgaaaacaagaattaacaaaaagggtagtggaaaaacctcgttgatgggtgaattagcgatgaaagaagaagcttcgatccga |
5901451 |
T |
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| Q |
247 |
aacaatttacgagtttcggtgaaattgttgtcacagaggtatctgtcaacgatgaaagcgatctggattggagtgactttgcctttgccgaaggattcag |
346 |
Q |
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| T |
5901452 |
aacaatttacgagtttcggtgaaattgttgtcacagaggtatctgtcaacgatgaaagcgatctggattggagtgactttgcctttgccgaaggattcag |
5901551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 5901206 - 5901290
Alignment:
| Q |
1 |
aaaccaaaaacaaacaaataaatacatatacataaagatccaatctttaccacataagaaaatgacccatttgagaaatttgaat |
85 |
Q |
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| T |
5901206 |
aaaccaaaaacaaacaaataaatacatatacataaagatccaatctttaccacataagaaaatgacccatttgagaaatttgaat |
5901290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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