View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8964_low_1 (Length: 906)
Name: NF8964_low_1
Description: NF8964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8964_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 493 - 892
Target Start/End: Original strand, 11837931 - 11838330
Alignment:
| Q |
493 |
aaaactagaaactataaatacaacatcaccaagcaaactgtgcttatggctccacaatgattttcccagtagcatggccatcaatgctcttagcccaagc |
592 |
Q |
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| T |
11837931 |
aaaaatagaaattataaatacaatatcaccaagcaaactgagcctatggctcaataatgatttttccagtagcatggccatcaatgctcttagcccaagc |
11838030 |
T |
|
| Q |
593 |
atcttcagctttgctcaaaggaaacttagaatcaataattgtcttgagttttccatccttcaccaattgaacgagatgttccaagccctcgcgcttgatt |
692 |
Q |
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|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| | |||| | ||||||||||||||||| ||||| | |
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| T |
11838031 |
atcttcagctttgctcaaaggaaacttagagtcgataattgtcttgagttttccatccttcactagttgagcaagatgttccaagccctcacgcttaaca |
11838130 |
T |
|
| Q |
693 |
gttgnnnnnnntggcaccaaccgcttctttgaaaaagtaagtttctgcagtgcagaaagcaacattgaacttgggccaggtgttaaatccacgacaaccc |
792 |
Q |
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||| |||||||||||||||||| |||||||||||||||| ||||||| || |||||||||||| || ||||||||||||||||||||||| | |
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| T |
11838131 |
gttacaacaaatggcaccaaccgcttcttcgaaaaagtaagtttcttcagtgcaaaagtcaacattgaactaggaccaggtgttaaatccacgacaactc |
11838230 |
T |
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| Q |
793 |
ctttttcacacaaattatgatcaaaagttgaccacggtattccaatggtgcaatgtattactgcatcatattttttaccagatggactcttcagtgatgt |
892 |
Q |
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| T |
11838231 |
ctttttcactcaaattaggatcaaaagttgaccacggtattccagtggtgcaatgtattactgcatcatattttttaccagatggactcttcagtgatgt |
11838330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 541 - 891
Target Start/End: Original strand, 11806707 - 11807057
Alignment:
| Q |
541 |
gctccacaatgattttcccagtagcatggccatcaatgctcttagcccaagcatcttcagctttgctcaaaggaaacttagaatcaataattgtcttgag |
640 |
Q |
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| T |
11806707 |
gctccacaatgatttttccagtagcatggccatcaatgctcttagcccaagcatattcagctttgttcaaaggaaacttcgagtcaataattgtcttgag |
11806806 |
T |
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| Q |
641 |
ttttccatccttcaccaattgaacgagatgttccaagccctcgcgcttgattgttgnnnnnnntggcaccaaccgcttctttgaaaaagtaagtttctgc |
740 |
Q |
| |
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||||||||||||||||| ||| ||||||||||||||||||| || |||| ||| ||| |||||| | ||||| ||||| |||||||||| | |
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| T |
11806807 |
ttttccatccttcaccagttgtgcgagatgttccaagccctcacgtttgacagttacaaaatatggtaccaactgtttcttcgaaaatgtaagtttcttc |
11806906 |
T |
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| Q |
741 |
agtgcagaaagcaacattgaacttgggccaggtgttaaatccacgacaacccctttttcacacaaattatgatcaaaagttgaccacggtattccaatgg |
840 |
Q |
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| T |
11806907 |
agctcaaaagtcaacattgaactcagaccagttgctaaatccacgacaatcccattttcactcaaattaggatcaaaagttgaccatggtattccagcgg |
11807006 |
T |
|
| Q |
841 |
tgcaatgtattactgcatcatattttttaccagatggactcttcagtgatg |
891 |
Q |
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| ||| ||| |||||||||||||| ||||||| |||||||||||||||| |
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| T |
11807007 |
taaaatttatcactgcatcatatttcctaccagacggactcttcagtgatg |
11807057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 539 - 891
Target Start/End: Original strand, 11430300 - 11430652
Alignment:
| Q |
539 |
tggctccacaatgattttcccagtagcatggccatcaatgctcttagcccaagcatcttcagctttgctcaaaggaaacttagaatcaataattgtcttg |
638 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||| |||||| |||||||| ||||||||||| |||||||||||| || ||||| |||||||| |
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| T |
11430300 |
tggctccacaatgatttttccagtagcatggccatcaatgatcttagaccaagcatattcagctttgcccaaaggaaacttggagtcaattattgtctta |
11430399 |
T |
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| Q |
639 |
agttttccatccttcaccaattgaacgagatgttccaagccctcgcgcttgattgttgnnnnnnntggcaccaaccgcttctttgaaaaagtaagtttct |
738 |
Q |
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||||||||||| ||||| |||| | | |||||||| |||||||| || ||||| ||| || ||| || |||||||||||| |||||||||| |
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| T |
11430400 |
agttttccatctttcactaattcagctagatgttctaagccctcacgtttgatagttacaataaaaggtacccacaacttctttgaaaaggtaagtttct |
11430499 |
T |
|
| Q |
739 |
gcagtgcagaaagcaacattgaacttgggccaggtgttaaatccacgacaacccctttttcacacaaattatgatcaaaagttgaccacggtattccaat |
838 |
Q |
| |
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|| ||| | || || ||||||||| |||||||||||||| || |||| || ||||| |||||| | |||||||||||||| ||||||||| |
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| T |
11430500 |
tcaacgcatatttcatcaatgaacttggtccaggtgttaaatctacaacaattccattttctgtcaaatttggttcaaaagttgaccatggtattccagc |
11430599 |
T |
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| Q |
839 |
ggtgcaatgtattactgcatcatattttttaccagatggactcttcagtgatg |
891 |
Q |
| |
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|| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
11430600 |
agtacaatgtattactgcatcatatttcctaccagatggactcttcagtgatg |
11430652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 539 - 891
Target Start/End: Complemental strand, 11565166 - 11564814
Alignment:
| Q |
539 |
tggctccacaatgattttcccagtagcatggccatcaatgctcttagcccaagcatcttcagctttgctcaaaggaaacttagaatcaataattgtcttg |
638 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||| |||||| |||||||| ||||||||||| |||||||||||| || ||||| |||||||| |
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| T |
11565166 |
tggctccacaatgatttttccagtagcatggccatcaatgatcttagaccaagcatattcagctttgcccaaaggaaacttggagtcaattattgtctta |
11565067 |
T |
|
| Q |
639 |
agttttccatccttcaccaattgaacgagatgttccaagccctcgcgcttgattgttgnnnnnnntggcaccaaccgcttctttgaaaaagtaagtttct |
738 |
Q |
| |
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||||||||||| ||||| |||| | | |||||||| |||||||| || ||||| ||| || ||| || |||||||||||| |||||||||| |
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| T |
11565066 |
agttttccatctttcactaattcagctagatgttctaagccctcacgtttgatagttacaataaaaggtacccacaacttctttgaaaaggtaagtttct |
11564967 |
T |
|
| Q |
739 |
gcagtgcagaaagcaacattgaacttgggccaggtgttaaatccacgacaacccctttttcacacaaattatgatcaaaagttgaccacggtattccaat |
838 |
Q |
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|| ||| | || || ||||||||| |||||||||||||| || |||| || ||||| |||||| | |||||||||||||| ||||||||| |
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| T |
11564966 |
tcaacgcatatttcatcaatgaacttggtccaggtgttaaatctacaacaattccattttctgtcaaatttggttcaaaagttgaccatggtattccagc |
11564867 |
T |
|
| Q |
839 |
ggtgcaatgtattactgcatcatattttttaccagatggactcttcagtgatg |
891 |
Q |
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|| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
11564866 |
agtacaatgtattactgcatcatatttcctaccagatggactcttcagtgatg |
11564814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 541 - 880
Target Start/End: Original strand, 11855251 - 11855590
Alignment:
| Q |
541 |
gctccacaatgattttcccagtagcatggccatcaatgctcttagcccaagcatcttcagctttgctcaaaggaaacttagaatcaataattgtcttgag |
640 |
Q |
| |
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||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
11855251 |
gctccactatgatttttccagtagcatggccatcgatgctcttagcccaagcatcttcagctttgctcaaaggaaacttggagtcaataattgtcttgag |
11855350 |
T |
|
| Q |
641 |
ttttccatccttcaccaattgaacgagatgttccaagccctcgcgcttgattgttgnnnnnnntggcaccaaccgcttctttgaaaaagtaagtttctgc |
740 |
Q |
| |
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||||||||||||||| || ||| |||||||||| ||||||||||| | ||| |||||| || ||||||| ||||| |||||||||| | |
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| T |
11855351 |
ttttccatccttcactaactgaccgagatgttctaagccctcgcgagttggagttaaaagaaacggcacccactgcttcttcgaaaaggtaagtttcttc |
11855450 |
T |
|
| Q |
741 |
agtgcagaaagcaacattgaacttgggccaggtgttaaatccacgacaacccctttttcacacaaattatgatcaaaagttgaccacggtattccaatgg |
840 |
Q |
| |
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| ||| || | ||||||| || ||||||||||||| |||| | |||||||| ||||| |||||||| | |||||| |||||| ||||||||| | |
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| T |
11855451 |
accgcaaaagtccacattgatctcgggccaggtgttatatccgctacaaccccattttccgacaaattaggctcaaaaactgaccatggtattccagcag |
11855550 |
T |
|
| Q |
841 |
tgcaatgtattactgcatcatattttttaccagatggact |
880 |
Q |
| |
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| |||||||| ||| |||||||||| ||||||| ||||| |
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| T |
11855551 |
tacaatgtatcactacatcatatttcctaccagaaggact |
11855590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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