View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8964_low_11 (Length: 371)
Name: NF8964_low_11
Description: NF8964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8964_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 131; Significance: 7e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 218 - 356
Target Start/End: Complemental strand, 36131743 - 36131605
Alignment:
| Q |
218 |
atcaaaactcaaacgttatagtttatcaccttcaaatatatgccagtgaaaaatatttaaggttctcattcatcttttctaaaacttatttctatcctag |
317 |
Q |
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| T |
36131743 |
atcaaaacttaaacgttatagtttatcaccttcaaatatatgctagtgaaaaatatttaaggttctcattcatcttttctaaaacttatttctatcctag |
36131644 |
T |
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| Q |
318 |
ctaatatggtaattcacgtatactctatagtactctatt |
356 |
Q |
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| T |
36131643 |
ctaatatggtaattcacgtatactctatagtactctatt |
36131605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 36131943 - 36131835
Alignment:
| Q |
18 |
acacacgcacacatgtagaacttcaataatattctaaccatatattttagaatttaattcttatacagggttagtataaagatattttacaatgtcaaac |
117 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36131943 |
acacacgcacacatgtagaacttcaataatattgtaaccatatattttagaatttaattcttatacagggttagtataaagatattttacaatgtcaaac |
36131844 |
T |
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| Q |
118 |
aaatcgtaa |
126 |
Q |
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| T |
36131843 |
aaatcgtaa |
36131835 |
T |
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