View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8964_low_13 (Length: 357)
Name: NF8964_low_13
Description: NF8964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8964_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 11 - 340
Target Start/End: Complemental strand, 5674446 - 5674117
Alignment:
| Q |
11 |
aagcagagaaaacttggacgaaaggaattgataaacgaaagtttaccgaaaatcaaactttcaacatttgatgtactctcctaccagtcttcattttggc |
110 |
Q |
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| T |
5674446 |
aagcagagaaaacttggacgaaaggaattgataaac-aaagtttaccgaaaatcaaactttcaacatttgatgtactctcctaccagtcttcattttggc |
5674348 |
T |
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| Q |
111 |
caagaagcgttggttgaaataccggcaataactcatcaacaagagcctcttcccattggaacaacggtcttcaccatactatgccagttgctcaagacca |
210 |
Q |
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| T |
5674347 |
caagaagcgtcggttgaaataccggcaataactcatcaacaagagcctcttcccattggaacaacggtcttcaccatactatgccaattgctcaagacca |
5674248 |
T |
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| Q |
211 |
accaaaggcccaatccgcttgataacaatcgattcacaaggtaaggcgccaagcccttataggggtaacacaccaccatcaatcaaggtgtcttcgtcca |
310 |
Q |
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| T |
5674247 |
accaaaggcccaatccgcttgataacaatcgattcacaaggtaaggcgccaagcccttataggggtaacacaccaccatcaatcaaggtgtcttcgtcca |
5674148 |
T |
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| Q |
311 |
ttcattaaaaacctct-acccgccacccacc |
340 |
Q |
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|||||||||||||||| |||||||||||||| |
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| T |
5674147 |
ttcattaaaaacctctcacccgccacccacc |
5674117 |
T |
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