View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8964_low_15 (Length: 341)
Name: NF8964_low_15
Description: NF8964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8964_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 31244624 - 31244945
Alignment:
| Q |
1 |
tgtttcccttgtaaatgagtctttgattttggattgggatgtcacagtttccaatgataagctgtttgaaggattcaactgtggattctagtacagcttc |
100 |
Q |
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| T |
31244624 |
tgtttcccttgtaaatgagtctttgattttggattgggatgtcacagtttccaatgataagctgtttgaaggattcaactgtggattctagtgcagcttc |
31244723 |
T |
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| Q |
101 |
aacacaaaactttgaaccattgaagtaacgaacattgatgtttacactttcagcaacgcccttcaatttgcatgcagcaacttctttatcttcaatcaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31244724 |
aacacaaaactttgaaccattgaagtaacgaacattgatgtttacactttcagcgacgcccttcaatttgcatgcagcaacttctttatcttcaatcaca |
31244823 |
T |
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| Q |
201 |
taacaacacaaaataatgtatcaaactttca----atgcatgcatgcaaaatataactatggataagttgttacatgtttatattctttataagttgcta |
296 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31244824 |
taacaacacaaaataatgtatcaaactttcaatgcatgcatgcatgcaaaatataactatggataagttgttacatgtttatattctttataagttgcta |
31244923 |
T |
|
| Q |
297 |
ttagacctaccggtgtttatgc |
318 |
Q |
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|||||||||||||||||||||| |
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| T |
31244924 |
ttagacctaccggtgtttatgc |
31244945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 3 - 237
Target Start/End: Original strand, 30416225 - 30416446
Alignment:
| Q |
3 |
tttcccttgtaaatgagtctttgattttggattgggatgtcacagtttccaatgataagctgtttgaaggattcaactgtggattctagtacagcttcaa |
102 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||| | || ||||||||| |
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| T |
30416225 |
tttcccttgtgaatgagtctttgattttggattgggatgtcacagtttccaacgacaagctctttgaaggattcgagtg------------cagcttcaa |
30416312 |
T |
|
| Q |
103 |
cacaaaactttgaaccattgaagtaacgaacattgatgtttacactttcagcaacgcccttcaatttgcatgcagcaacttctttatcttcaatcacata |
202 |
Q |
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||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||| |||| |||| |
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| T |
30416313 |
cacaaaactttgaaccattgaagaaacgaacattgatgtctacactttcagcaacgcccttcaatttgcatgcaacaacttcttcatcttgaatcgcata |
30416412 |
T |
|
| Q |
203 |
acaacacaaaataatgtatcaaactttcaatgcat |
237 |
Q |
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||||||| ||||||||||||||||||| ||||||| |
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| T |
30416413 |
acaacac-aaataatgtatcaaactttgaatgcat |
30416446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 301
Target Start/End: Original strand, 30416486 - 30416523
Alignment:
| Q |
264 |
ttgttacatgtttatattctttataagttgctattaga |
301 |
Q |
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| T |
30416486 |
ttgttacatgtttataatctttataagttgcttttaga |
30416523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 7206910 - 7206943
Alignment:
| Q |
9 |
ttgtaaatgagtctttgattttggattgggatgt |
42 |
Q |
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||||||||||||||||||||||| |||||||||| |
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| T |
7206910 |
ttgtaaatgagtctttgattttgtattgggatgt |
7206943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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