View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8964_low_16 (Length: 323)
Name: NF8964_low_16
Description: NF8964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8964_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 30774346 - 30774048
Alignment:
| Q |
1 |
tcaaaaagatcaatgatgcaattgcagtggctacaaatttgcttgataagaataatcagcggaatgaaagtaatgttctcgaagatcatatgaagaagct |
100 |
Q |
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| T |
30774346 |
tcaaaaagatcactgatgcaattgcagtggctacaaatttgcttgataagaataatcagcggaatgaaattcatgttctcgaagatcatatgaagaagct |
30774247 |
T |
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| Q |
101 |
tgaaaatatgttggaagaccttgaagtaaagactggatagttttctttttcagcagttaggttgttaagtgttgtcctgctatt----gtggtgaacgga |
196 |
Q |
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| T |
30774246 |
tgaaaatatgttgaaagaccttgaagtaaagactgaatagttttctttttcagcagttaggttgataagtgttgtcttgcttttgtacgtcgtgaatgga |
30774147 |
T |
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| Q |
197 |
aacttttatgatcgatgatggtctattatatgttatctactagttttgaaggttggacaaaatttgtagtgaccatgttatctaagattgtgactgttcc |
296 |
Q |
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| T |
30774146 |
aacctttat----gatgatgatttattatatattttctattagttttgaaggttggacaaaatttgctgtgaccatgttatctaagattgtgactgttcc |
30774051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 174
Target Start/End: Complemental strand, 8615794 - 8615635
Alignment:
| Q |
16 |
atgcaattgcagtggctacaaatttgcttgataagaataatcagcggaatgaaagta-atgttctcgaagatcatatgaagaagcttgaaaatatgttgg |
114 |
Q |
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| T |
8615794 |
atgcaattactgtggctacaaatttgcttgataggaataaccagcagagtgaa-gtagaagttctcgaagatcatctgaaggagctcaaaagtatgttgg |
8615696 |
T |
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| Q |
115 |
aagaccttgaagtaaagact-ggatagttttctttttcagcagttaggttgttaagtgttg |
174 |
Q |
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| T |
8615695 |
aagaccttgtatttaagactaagctagtttcctttttcagcaattagttttttaagtgttg |
8615635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 181
Target Start/End: Original strand, 8586782 - 8586960
Alignment:
| Q |
3 |
aaaaagatcaatgatgcaattgcagtggctacaaatttgcttgataagaataatcagcggaatgaaagtaatgttctcgaagatcatatgaagaagcttg |
102 |
Q |
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| T |
8586782 |
aaaaagatcaatcatgcaattacaatggctacaaatttgcttgataagaataaccaggagaatgacatagatgttcttgtggatcatctgaaggagcttg |
8586881 |
T |
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| Q |
103 |
aaaatatgttggaagaccttgaagtaaagactggatagttttctttttcagcagttaggttgttaagtgttgtcctgct |
181 |
Q |
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| T |
8586882 |
agagcatgttggaagaccttttggtcaagagtggctagttttctttccaagaagttagatttttaaatgttgtcttgct |
8586960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 15594128 - 15594081
Alignment:
| Q |
5 |
aaagatcaatgatgcaattgcagtggctacaaatttgcttgataagaa |
52 |
Q |
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| T |
15594128 |
aaagatcaatggtgcaattacagtggctacaaatttgcttgataagaa |
15594081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 4679628 - 4679679
Alignment:
| Q |
4 |
aaaagatcaatgatgcaattgcagtggctacaaatttgcttgataagaataa |
55 |
Q |
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| T |
4679628 |
aaaagatcaacgatgcaattacagtggccaccaacttgcttgataagaataa |
4679679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 147
Target Start/End: Original strand, 16663071 - 16663215
Alignment:
| Q |
3 |
aaaaagatcaatgatgcaattgcagtggctacaaatttgcttgataagaataatcagcggaatgaaagta-atgttctcgaagatcatatgaagaagctt |
101 |
Q |
| |
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|||||||||||| |||||||| | ||||||| | |||||||| || |||| || ||| |||||| ||||| ||||||| || |||||| ||||| ||||| |
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| T |
16663071 |
aaaaagatcaatcatgcaattacggtggctaaagatttgcttcatgagaagaaccaggggaatg-aagtagatgttcttgaggatcatctgaaggagctt |
16663169 |
T |
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| Q |
102 |
gaaaatatgttggaagaccttgaagtaaagactggatagttttctt |
147 |
Q |
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| T |
16663170 |
gagagtatgttggatcaccttgtaatcaagactgtctagttttctt |
16663215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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