View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8964_low_2 (Length: 564)
Name: NF8964_low_2
Description: NF8964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8964_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 13 - 283
Target Start/End: Complemental strand, 3307621 - 3307351
Alignment:
| Q |
13 |
attattctgccagaattgtcattaataaagtgttcgtattgtgcaaattaccacggttcagaatcagtttctatcgcattccttttgtattgtgtgtgta |
112 |
Q |
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| T |
3307621 |
attattctgccagaattgtcattaataaagtgttcgtattgtgcaaattaccacggttcagaatcagtttctatcgcattccttttgtattgtgtgtgta |
3307522 |
T |
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| Q |
113 |
tgcaatcttgttgtgaacaaccctaccagaattgtcgttaataaagtgttcgcattgtgaaaattaatccgattcagaatcagtttctatcacattcctt |
212 |
Q |
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| T |
3307521 |
tgcaatcttgttgtgaacaaccctaccagaattgtcgttaataaagtgttcgcattgtgaaaattactccgattcagaatcagtttctatcacattcctt |
3307422 |
T |
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| Q |
213 |
ttgtggtgtcctatttccttgaactgaactcatctactataatcaaggaatctgcactcttttaattgaca |
283 |
Q |
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| T |
3307421 |
ttgtggtgtcctatttccttgaactgaactcatctactataatcaaggaatctgcactcttttaattgaca |
3307351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 357 - 451
Target Start/End: Complemental strand, 3307277 - 3307183
Alignment:
| Q |
357 |
ctaaaaacagtataatggatatatttcaatttgcactgatgaaatcgaaatattgcagataactgctatatggacaatcatttattagaaaaaat |
451 |
Q |
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| T |
3307277 |
ctaaaaacagtataatggatatatttcaatttgcactgatgaaatcgaaatattgcagataactgctatatagacaattatttattagaaaaaat |
3307183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 453 - 544
Target Start/End: Complemental strand, 3314403 - 3314310
Alignment:
| Q |
453 |
aaaactatatatattttcacacaatcctacaaaatgttaacccatc--ataacattattacattggtttagttggcaatgagtttgactcccct |
544 |
Q |
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| T |
3314403 |
aaaactatatatattttcacacagtcctacaaaatgttaacccatcatatatcattattacattggtttagttggcaatgagtttgactcccct |
3314310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 3300916 - 3300855
Alignment:
| Q |
14 |
ttattctgccagaattgtcattaataaagtgttcgtattgtgcaaattaccacggttcagaa |
75 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3300916 |
ttattcagccagaattgtcattaataaagtgttcgtattgtgcaaattaccacggtttagaa |
3300855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 178
Target Start/End: Complemental strand, 3300941 - 3300868
Alignment:
| Q |
105 |
tgtgtgtatgcaatcttgttgtgaacaaccctaccagaattgtcgttaataaagtgttcgcattgtgaaaatta |
178 |
Q |
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| T |
3300941 |
tgtgtgtatgcaatctggttgtgagttattcagccagaattgtcattaataaagtgttcgtattgtgcaaatta |
3300868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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