View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8964_low_22 (Length: 268)
Name: NF8964_low_22
Description: NF8964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8964_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 8252478 - 8252241
Alignment:
| Q |
19 |
gacctcatgttaacaaacaaaagggagctggttatctgcgtcatacagcacaaagtatgaggcatattgcaagacttccggctaaagaccgtagtgcttc |
118 |
Q |
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| T |
8252478 |
gacctcatgttaacaaacaaaagggagttggttatctgcgtcatacggcacaaagtatgaggcatattgcaagacttccggctaaagaccgtagtgcttc |
8252379 |
T |
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| Q |
119 |
tcagtcgtaagttaataatgagtggcagaactggttggtgcttcatggtactgattgtgtaacaacagaggacgttcgggggatagggaaggagattggg |
218 |
Q |
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| T |
8252378 |
tcagtcgtcagttaataatgagtggcagaactggttggtgcttcatggtactgattgtgtaacaacagaggacgttcgggggatagggaaggagattggg |
8252279 |
T |
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| Q |
219 |
ataaaatttgcaggggataaaaataatgtgtttgatgt |
256 |
Q |
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| T |
8252278 |
ataaaatttgcaggggataaaaataatatgtttgatgt |
8252241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 111 - 256
Target Start/End: Complemental strand, 44894556 - 44894411
Alignment:
| Q |
111 |
agtgcttctcagtcgtaagttaataatgagtggcagaactggttggtgcttcatggtactgattgtgtaacaacagaggacgttcgggggatagggaagg |
210 |
Q |
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| T |
44894556 |
agtgtttctcagtcatctgttaataatgactgggagaattggttggtgcttcatggtactgatcgagtggcacaggaggatgttacggggataggaaagg |
44894457 |
T |
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| Q |
211 |
agattgggataaaatttgcaggggataaaaataatgtgtttgatgt |
256 |
Q |
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| T |
44894456 |
agattggactaaaatttggcggagataataataatatgtttgatgt |
44894411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 167
Target Start/End: Original strand, 20506957 - 20506995
Alignment:
| Q |
129 |
gttaataatgagtggcagaactggttggtgcttcatggt |
167 |
Q |
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| T |
20506957 |
gttaataatgagtggcaaaactggttggtgcttcatggt |
20506995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 19157178 - 19157134
Alignment:
| Q |
129 |
gttaataatgagtggcagaactggttggtgcttcatggtactgat |
173 |
Q |
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| T |
19157178 |
gttaataatgattggcaaaactggttggtgcttcatggtattgat |
19157134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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