View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8964_low_24 (Length: 264)
Name: NF8964_low_24
Description: NF8964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8964_low_24 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 264
Target Start/End: Complemental strand, 5955243 - 5954990
Alignment:
| Q |
10 |
gcatagggtggaaaaagtaatagtcaaagaattttggataggtaagcaaaagagatcgggtacgggttacttcatggtttaccacgtagacctatgatcc |
109 |
Q |
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| T |
5955243 |
gcatagggtggaaaaagtaatagtctaagaattttggataggtaag-aaaagcgatcgggtacgggttacttcatggtttaccacgtagacctttgatcc |
5955145 |
T |
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| Q |
110 |
aacgggtatatttatgcagacacgttggcaagaaccgcttcaagccgttagatatcttcctctggaaaattctttgttataagaagtgggtttctttatt |
209 |
Q |
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| T |
5955144 |
aacgggtatatttacgcagacacgttggcaagaaccgcttcaagccgttagatatcttcctctggaaaattctttgttataagaagtgggtttctttatt |
5955045 |
T |
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| Q |
210 |
tcactttcagtttcagtttcaaaacctcgtaggttgctcctttcccttcttttcc |
264 |
Q |
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| T |
5955044 |
tcactttcactttcagtttcaaaacctcgtaggttgctcctttcccttcttttcc |
5954990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 19513819 - 19513782
Alignment:
| Q |
11 |
catagggtggaaaaagtaatagtcaaagaattttggat |
48 |
Q |
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| T |
19513819 |
catagggtggaaaaagtaatagtcaaaatattttggat |
19513782 |
T |
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