View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8964_low_27 (Length: 246)

Name: NF8964_low_27
Description: NF8964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8964_low_27
NF8964_low_27
[»] chr6 (4 HSPs)
chr6 (147-229)||(11366459-11366541)
chr6 (5-74)||(9566691-9566760)
chr6 (20-75)||(11366612-11366666)
chr6 (147-224)||(9566541-9566618)
[»] chr2 (6 HSPs)
chr2 (150-229)||(27888372-27888451)
chr2 (2-75)||(27888631-27888704)
chr2 (2-74)||(1533158-1533230)
chr2 (2-62)||(6705381-6705441)
chr2 (150-229)||(1532898-1532977)
chr2 (2-74)||(40900084-40900156)
[»] chr1 (9 HSPs)
chr1 (20-74)||(47896577-47896631)
chr1 (147-228)||(47896424-47896505)
chr1 (2-74)||(27786955-27787027)
chr1 (147-229)||(4654134-4654216)
chr1 (147-229)||(8038937-8039019)
chr1 (2-62)||(15495749-15495809)
chr1 (150-229)||(27787208-27787287)
chr1 (20-74)||(8039094-8039148)
chr1 (21-75)||(25537565-25537618)
[»] chr7 (6 HSPs)
chr7 (5-74)||(34293730-34293799)
chr7 (147-228)||(34293872-34293953)
chr7 (5-74)||(36582699-36582768)
chr7 (147-229)||(10365491-10365573)
chr7 (20-74)||(10365645-10365699)
chr7 (2-74)||(32979076-32979148)
[»] chr3 (2 HSPs)
chr3 (20-71)||(11387337-11387388)
chr3 (2-75)||(46743101-46743174)
[»] scaffold0005 (2 HSPs)
scaffold0005 (147-213)||(269672-269738)
scaffold0005 (20-74)||(269810-269864)
[»] chr8 (4 HSPs)
chr8 (2-74)||(10181920-10181992)
chr8 (147-229)||(38498939-38499019)
chr8 (20-74)||(38499091-38499145)
chr8 (150-222)||(15050505-15050578)
[»] scaffold0725 (1 HSPs)
scaffold0725 (5-46)||(949-990)
[»] chr5 (3 HSPs)
chr5 (157-229)||(26331551-26331624)
chr5 (157-229)||(26331893-26331966)
chr5 (150-195)||(40600358-40600403)
[»] scaffold0088 (1 HSPs)
scaffold0088 (5-57)||(26852-26904)
[»] chr4 (4 HSPs)
chr4 (2-64)||(12130392-12130454)
chr4 (2-75)||(42677816-42677888)
chr4 (150-222)||(45872729-45872802)
chr4 (150-221)||(42678068-42678139)


Alignment Details
Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 147 - 229
Target Start/End: Complemental strand, 11366541 - 11366459
Alignment:
Q  147 taaaagtttatatttgatacatgagtgtttgtttaggtgttccatatatctactgacacttttcctttgtatgttgctcttta 229  Q
    ||||||||||| |||||||||||||||||||||| ||||||||  |||| ||| |||||||||||||||||||||||||||||    
T  11366541 taaaagtttatgtttgatacatgagtgtttgtttgggtgttccgcatatatacggacacttttcctttgtatgttgctcttta 11366459  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 9566760 - 9566691
Alignment:
Q  5 tttggtgttgatgatgttttcaaatacacggatgttagctggtgtgggttgtttaaggtgcggttacatg 74  Q
    |||| ||||||||| ||||||||||||| |||||||||||||||| | ||||||||||||||||||||||    
T  9566760 tttgttgttgatgaggttttcaaatacatggatgttagctggtgtagtttgtttaaggtgcggttacatg 9566691  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 11366666 - 11366612
Alignment:
Q  20 gttttcaaatacacggatgttagctggtgtgggttgtttaaggtgcggttacatga 75  Q
    |||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||    
T  11366666 gttttcaaatacacggatgttagctggtgt-ggttttttaatgtgcggttacatga 11366612  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 224
Target Start/End: Complemental strand, 9566618 - 9566541
Alignment:
Q  147 taaaagtttatatttgatacatgagtgtttgtttaggtgttccatatatctactgacacttttcctttgtatgttgct 224  Q
    ||||||||||||||||||| ||||||||||||||  || ||||  |||| ||| ||||||||||||||| ||| ||||    
T  9566618 taaaagtttatatttgatagatgagtgtttgtttgagtattccgcatatatacggacacttttcctttgcatggtgct 9566541  T

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Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 150 - 229
Target Start/End: Complemental strand, 27888451 - 27888372
Alignment:
Q  150 aagtttatatttgatacatgagtgtttgtttaggtgttccatatatctactgacacttttcctttgtatgttgctcttta 229  Q
    |||||| |||||||||||||||||||||||| ||||||||  |||| ||| |||||||||||||||||||||||||||||    
T  27888451 aagtttgtatttgatacatgagtgtttgtttgggtgttccgcatatatacggacacttttcctttgtatgttgctcttta 27888372  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 27888704 - 27888631
Alignment:
Q  2 gagtttggtgttgatgatgttttcaaatacacggatgttagctggtgtgggttgtttaaggtgcggttacatga 75  Q
    ||||||| ||||||||  ||||||||| ||||||||||||||||| |||| ||||||||  |||||||||||||    
T  27888704 gagtttgttgttgatggggttttcaaacacacggatgttagctggcgtggcttgtttaaactgcggttacatga 27888631  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 1533230 - 1533158
Alignment:
Q  2 gagtttggtgttgatgatgttttcaaatacacggatgttagctggtgtgggttgtttaaggtgcggttacatg 74  Q
    ||||||| ||||||||  |||||||||||||||||| |||| |||| ||  |||||||||||||| |||||||    
T  1533230 gagtttgttgttgatggggttttcaaatacacggatattagatggtatgacttgtttaaggtgcgattacatg 1533158  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 6705441 - 6705381
Alignment:
Q  2 gagtttggtgttgatgatgttttcaaatacacggatgttagctggtgtgggttgtttaagg 62  Q
    ||||||| ||||||| ||||||||||||||| |||||||||  ||||||| ||||||||||    
T  6705441 gagtttgttgttgataatgttttcaaatacatggatgttagacggtgtggcttgtttaagg 6705381  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 229
Target Start/End: Complemental strand, 1532977 - 1532898
Alignment:
Q  150 aagtttatatttgatacatgagtgtttgtttaggtgttccatatatctactgacacttttcctttgtatgttgctcttta 229  Q
    |||||| |||||||||||||  || |||||| | ||||||  |||| ||  |||||||||| ||||||||||||||||||    
T  1532977 aagtttgtatttgatacatggatgattgtttggatgttccgcatatatatagacacttttcgtttgtatgttgctcttta 1532898  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 40900156 - 40900084
Alignment:
Q  2 gagtttggtgttgatgatgttttcaaatacacggatgttagctggtgtgggttgtttaaggtgcggttacatg 74  Q
    ||||||| || |||||| ||||||||||||| |||||||||  |   ||| ||||||||||| ||||||||||    
T  40900156 gagtttgttgatgatgaggttttcaaatacatggatgttagacgtcatggcttgtttaaggttcggttacatg 40900084  T

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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 47896631 - 47896577
Alignment:
Q  20 gttttcaaatacacggatgttagctggtgtgggttgtttaaggtgcggttacatg 74  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  47896631 gttttcaaatacacggatgttagctggtgtggtttgtttaaggtgcggttacatg 47896577  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 228
Target Start/End: Complemental strand, 47896505 - 47896424
Alignment:
Q  147 taaaagtttatatttgatacatgagtgtttgtttaggtgttccatatatctactgacacttttcctttgtatgttgctcttt 228  Q
    ||||||||||||||||||||||| |||||||||| | ||||||  |||| ||| ||||||||| ||||||||||||||||||    
T  47896505 taaaagtttatatttgatacatgggtgtttgtttggatgttccgcatatatacggacactttttctttgtatgttgctcttt 47896424  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 27786955 - 27787027
Alignment:
Q  2 gagtttggtgttgatgatgttttcaaatacacggatgttagctggtgtgggttgtttaaggtgcggttacatg 74  Q
    ||||||| ||||||||  ||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||    
T  27786955 gagtttgttgttgatggggttttcaaatacacggatgttagatggtgtggcttgtttaaggtgcagttacatg 27787027  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 147 - 229
Target Start/End: Original strand, 4654134 - 4654216
Alignment:
Q  147 taaaagtttatatttgatacatgagtgtttgtttaggtgttccatatatctactgacacttttcctttgtatgttgctcttta 229  Q
    ||||| |||||||||||||||||||||||| |||  |||||||| |||| ||  |||||||| ||||||||||||||||||||    
T  4654134 taaaaatttatatttgatacatgagtgtttatttgagtgttccacatatatagagacactttccctttgtatgttgctcttta 4654216  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 229
Target Start/End: Complemental strand, 8039019 - 8038937
Alignment:
Q  147 taaaagtttatatttgatacatgagtgtttgtttaggtgttccatatatctactgacacttttcctttgtatgttgctcttta 229  Q
    |||||||||||||||||| ||||||||||||||| ||||||||  |||| |||  ||||||||||||| |||| || ||||||    
T  8039019 taaaagtttatatttgatgcatgagtgtttgtttgggtgttccgcatatatacatacacttttcctttatatggtgttcttta 8038937  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 15495809 - 15495749
Alignment:
Q  2 gagtttggtgttgatgatgttttcaaatacacggatgttagctggtgtgggttgtttaagg 62  Q
    ||||||| ||||||||| ||||||||||||| |||||||||  ||||||| ||||||||||    
T  15495809 gagtttgttgttgatgaggttttcaaatacatggatgttagacggtgtggcttgtttaagg 15495749  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 229
Target Start/End: Original strand, 27787208 - 27787287
Alignment:
Q  150 aagtttatatttgatacatgagtgtttgtttaggtgttccatatatctactgacacttttcctttgtatgttgctcttta 229  Q
    |||||| |||||||||||||  ||||||||| ||||||||  |||| ||  |||||||||| ||||||||||| ||||||    
T  27787208 aagtttgtatttgatacatggctgtttgtttgggtgttccgcatatatatggacacttttcgtttgtatgttgttcttta 27787287  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 8039148 - 8039094
Alignment:
Q  20 gttttcaaatacacggatgttagctggtgtgggttgtttaaggtgcggttacatg 74  Q
    ||||||| | ||||| ||||||||||||||||  ||||||||||| |||||||||    
T  8039148 gttttcatacacacgcatgttagctggtgtggtctgtttaaggtgtggttacatg 8039094  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 25537618 - 25537565
Alignment:
Q  21 ttttcaaatacacggatgttagctggtgtgggttgtttaaggtgcggttacatga 75  Q
    |||||||||||| | |||||||  ||||||| |||||||||||||||||||||||    
T  25537618 ttttcaaatacatg-atgttagacggtgtggcttgtttaaggtgcggttacatga 25537565  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 34293730 - 34293799
Alignment:
Q  5 tttggtgttgatgatgttttcaaatacacggatgttagctggtgtgggttgtttaaggtgcggttacatg 74  Q
    |||| ||||||||| ||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||    
T  34293730 tttgttgttgatgaggttttcaaatacatggatgttagctgatgtggtttgtttaaggtgcggttacatg 34293799  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 147 - 228
Target Start/End: Original strand, 34293872 - 34293953
Alignment:
Q  147 taaaagtttatatttgatacatgagtgtttgtttaggtgttccatatatctactgacacttttcctttgtatgttgctcttt 228  Q
    ||||||||||||||||||||||| ||||||||||  || ||||  |||| ||| ||||||||||||||||||| ||||||||    
T  34293872 taaaagtttatatttgatacatgggtgtttgtttgagtattccgcatatatacggacacttttcctttgtatggtgctcttt 34293953  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 36582768 - 36582699
Alignment:
Q  5 tttggtgttgatgatgttttcaaatacacggatgttagctggtgtgggttgtttaaggtgcggttacatg 74  Q
    |||| ||||||||| |||||||||||||||||| ||| ||||||||| |||||||| |||||||||||||    
T  36582768 tttgttgttgatgaggttttcaaatacacggatcttaactggtgtggtttgtttaaagtgcggttacatg 36582699  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 229
Target Start/End: Complemental strand, 10365573 - 10365491
Alignment:
Q  147 taaaagtttatatttgatacatgagtgtttgtttaggtgttccatatatctactgacacttttcctttgtatgttgctcttta 229  Q
    |||||||||||||||||||||||||||||||||| | |||| || |||| ||| | ||||||||| || |||| |||||||||    
T  10365573 taaaagtttatatttgatacatgagtgtttgtttggctgttgcacatatatacagtcacttttcccttctatggtgctcttta 10365491  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 10365699 - 10365645
Alignment:
Q  20 gttttcaaatacacggatgttagctggtgtgggttgtttaaggtgcggttacatg 74  Q
    ||||||||| ||||||||||||||||||||||  |||||||||||||||||||||    
T  10365699 gttttcaaacacacggatgttagctggtgtggtctgtttaaggtgcggttacatg 10365645  T

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Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 32979148 - 32979076
Alignment:
Q  2 gagtttggtgttgatgatgttttcaaatacacggatgttagctggtgtgggttgtttaaggtgcggttacatg 74  Q
    ||||||| ||||||||  |||||||||||  ||||| |||| |||||||| ||||||||||||||||||||||    
T  32979148 gagtttgttgttgatggagttttcaaataggcggatattagatggtgtggcttgtttaaggtgcggttacatg 32979076  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 11387388 - 11387337
Alignment:
Q  20 gttttcaaatacacggatgttagctggtgtgggttgtttaaggtgcggttac 71  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  11387388 gttttcaaatacacggatgttagctggtgtggtttgtttaaggtgcggttac 11387337  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 46743101 - 46743174
Alignment:
Q  2 gagtttggtgttgatgatgttttcaaatacacggatgttagctggtgtgggttgtttaaggtgcggttacatga 75  Q
    ||||||| ||||||||  ||||||||||||||||||||||| |||||||| |||||||||||||| || |||||    
T  46743101 gagtttgttgttgatggggttttcaaatacacggatgttagatggtgtggcttgtttaaggtgcgattgcatga 46743174  T

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Target: scaffold0005 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 147 - 213
Target Start/End: Complemental strand, 269738 - 269672
Alignment:
Q  147 taaaagtttatatttgatacatgagtgtttgtttaggtgttccatatatctactgacacttttcctt 213  Q
    ||||||||||||||||||||||| |||||||||||||||||||  |||| ||| |||||||||||||    
T  269738 taaaagtttatatttgatacatgggtgtttgtttaggtgttccgcatatgtacggacacttttcctt 269672  T

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Target: scaffold0005; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 269864 - 269810
Alignment:
Q  20 gttttcaaatacacggatgttagctggtgtgggttgtttaaggtgcggttacatg 74  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  269864 gttttcaaatacacggatgttagctagtgtggtttgtttaaggtgcggttacatg 269810  T

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Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 10181992 - 10181920
Alignment:
Q  2 gagtttggtgttgatgatgttttcaaatacacggatgttagctggtgtgggttgtttaaggtgcggttacatg 74  Q
    ||||||| ||||||||  ||||||||||||||||||||||  |||||||  ||||||||||||||||||||||    
T  10181992 gagtttgttgttgatggggttttcaaatacacggatgttatatggtgtgacttgtttaaggtgcggttacatg 10181920  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 229
Target Start/End: Complemental strand, 38499019 - 38498939
Alignment:
Q  147 taaaagtttatatttgatacatgagtgtttgtttaggtgttccatatatctactgacacttttcctttgtatgttgctcttta 229  Q
    |||||||||||||| |||||||| |||||||||| ||||||||  |||  | | |||||||||||||||||||||||||||||    
T  38499019 taaaagtttatattcgatacatgggtgtttgtttgggtgttccgcata--tgcggacacttttcctttgtatgttgctcttta 38498939  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 38499145 - 38499091
Alignment:
Q  20 gttttcaaatacacggatgttagctggtgtgggttgtttaaggtgcggttacatg 74  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||    
T  38499145 gttttcaaatacacggatgttaactggtgtggtttgtttaaggtgcagttacatg 38499091  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 15050505 - 15050578
Alignment:
Q  150 aagtttatatttgatacatgagtgtttgtttaggtgttccatatatctactg-acacttttcctttgtatgttg 222  Q
    |||||| ||||||||||||| ||||||||||  |||||||  |||| ||| | ||||||||||| |||||||||    
T  15050505 aagtttgtatttgatacatgggtgtttgtttgtgtgttccgcatatatacggcacacttttcctgtgtatgttg 15050578  T

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Target: scaffold0725 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0725
Description:

Target: scaffold0725; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 990 - 949
Alignment:
Q  5 tttggtgttgatgatgttttcaaatacacggatgttagctgg 46  Q
    |||| ||||||||| |||||||||||||||||||||||||||    
T  990 tttgttgttgatgaggttttcaaatacacggatgttagctgg 949  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 26331551 - 26331624
Alignment:
Q  157 tatttgatacatgagtgtttgtttaggtgttccatatatctac-tgacacttttcctttgtatgttgctcttta 229  Q
    |||||||||||||||||||||||| | ||||||  |||| |||   ||||||||||||||||||||||| ||||    
T  26331551 tatttgatacatgagtgtttgtttggatgttccgcatatatacgaaacacttttcctttgtatgttgcttttta 26331624  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 26331893 - 26331966
Alignment:
Q  157 tatttgatacatgagtgtttgtttaggtgttccatatatctac-tgacacttttcctttgtatgttgctcttta 229  Q
    |||||||||||||||||||||||| | ||||||  |||| |||   ||||||||||||||||||||||| ||||    
T  26331893 tatttgatacatgagtgtttgtttggatgttccgcatatatacgaaacacttttcctttgtatgttgcttttta 26331966  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 40600358 - 40600403
Alignment:
Q  150 aagtttatatttgatacatgagtgtttgtttaggtgttccatatat 195  Q
    |||||| |||||||| ||||||||||||||| ||||||||| ||||    
T  40600358 aagtttgtatttgatgcatgagtgtttgtttgggtgttccacatat 40600403  T

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Target: scaffold0088 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 26904 - 26852
Alignment:
Q  5 tttggtgttgatgatgttttcaaatacacggatgttagctggtgtgggttgtt 57  Q
    |||| ||||||||| |||||||||||||||||||||| |||| |||| |||||    
T  26904 tttgttgttgatgaggttttcaaatacacggatgttaactggcgtggtttgtt 26852  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 12130454 - 12130392
Alignment:
Q  2 gagtttggtgttgatgatgttttcaaatacacggatgttagctggtgtgggttgtttaaggtg 64  Q
    ||||||| ||||||||| ||||||||||||| |||||||||  |  |||| ||||||||||||    
T  12130454 gagtttgttgttgatgaggttttcaaatacatggatgttagacgacgtggcttgtttaaggtg 12130392  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 42677816 - 42677888
Alignment:
Q  2 gagtttggtgttgatgatgttttcaaatacacggatgttagctggtgtgggttgtttaaggtgcggttacatga 75  Q
    ||||||| ||||||||| |||||||| |||| |||||||||    ||||  |||||||||||||||||||||||    
T  42677816 gagtttgttgttgatgaggttttcaa-tacatggatgttagacactgtgacttgtttaaggtgcggttacatga 42677888  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 222
Target Start/End: Complemental strand, 45872802 - 45872729
Alignment:
Q  150 aagtttatatttgatacatgagtgtttgtttaggtgttccatatatctactg-acacttttcctttgtatgttg 222  Q
    |||||| |||||||||  ||||||||||||| ||||||||  |||| ||| | |||||||| ||||||||||||    
T  45872802 aagtttgtatttgatatgtgagtgtttgtttgggtgttccgcatatatacggaacactttttctttgtatgttg 45872729  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 42678068 - 42678139
Alignment:
Q  150 aagtttatatttgatacatgagtgtttgtttaggtgttccatatatctact-gacacttttcctttgtatgtt 221  Q
    |||||| |||||||| ||||| ||||||||| ||||||||| |||| |||  |||||||||||||| ||||||    
T  42678068 aagtttgtatttgatgcatga-tgtttgtttgggtgttccacatatatacgagacacttttcctttttatgtt 42678139  T

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