View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8964_low_3 (Length: 487)
Name: NF8964_low_3
Description: NF8964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8964_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 101 - 477
Target Start/End: Complemental strand, 36464715 - 36464341
Alignment:
| Q |
101 |
tgtttttatcccagatgaataagaagaaaaatgttgtcccaaaagttgttcatgatcgtacaaatattatttctttattgaagtgacaatcactaaagta |
200 |
Q |
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| T |
36464715 |
tgtttttatcccagataaataagaagaaaaatgttgtctcaaaagttgttcatgatcgtacaaatattatttctttattgaagtgacaatcactaaagta |
36464616 |
T |
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| Q |
201 |
attgtttactctattaatttctttgacactgcttatccattgatgtagttttggatatatgtaacaggcatttcagttaaagcttttttaaaaggtgtta |
300 |
Q |
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| T |
36464615 |
attgtttactctattaatttctttgacactgcttatccattgatgtagttttggatatatgtaacaggcatttcagttaaagcttttttaaaaggtgtta |
36464516 |
T |
|
| Q |
301 |
acacctggaaaaatgaaactcttgctaagaaggttacgtaaacataattaattctttatagtattttatannnnnnnnnnngtatttttatgctttgttt |
400 |
Q |
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| T |
36464515 |
acacctggaaaaatgaaactcttgctaagaaggttacgtaaacataattaattctttatagtattttata--tttttttttgtatttttatgctttgttt |
36464418 |
T |
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| Q |
401 |
aatgcttatccctgtacaatttcaggaagctagagacaattcacaattaaatggtgattaatctgacatcatctctg |
477 |
Q |
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| T |
36464417 |
aatgcttatccctgtacaatttcaggaagctagagacaattcacaattaaatggtgattaatctgacatcatttctg |
36464341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 36464797 - 36464738
Alignment:
| Q |
17 |
ataaattatatttgtacagttgttttagaataactatcttatagttgcattgtgttttta |
76 |
Q |
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| T |
36464797 |
ataaattatatttgtacagttgttttagaataactatcttatagttgcattgtgttttta |
36464738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 240 - 358
Target Start/End: Complemental strand, 36474145 - 36474026
Alignment:
| Q |
240 |
ttgatgtagttttggatatatgt-aacaggcatttcagttaaagcttttttaaaaggtgttaacacctggaaaaatgaaactcttgctaagaaggttacg |
338 |
Q |
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||||| |||||||||||||||| |||||| ||||||||||| ||||| ||||| ||||||||||| |||||||| ||||| ||| | ||||||||| | |
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| T |
36474145 |
ttgatatagttttggatatatgggaacaggtatttcagttaacgctttcttaaagggtgttaacacttggaaaaaagaaacccttaccaagaaggttgct |
36474046 |
T |
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| Q |
339 |
taaacataattaattcttta |
358 |
Q |
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|| |||||| | |||||||| |
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| T |
36474045 |
tatacataactcattcttta |
36474026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 415 - 455
Target Start/End: Complemental strand, 36473719 - 36473679
Alignment:
| Q |
415 |
tacaatttcaggaagctagagacaattcacaattaaatggt |
455 |
Q |
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| T |
36473719 |
tacaattccaggaagctaaggacaattcacaattaaatggt |
36473679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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