View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8964_low_30 (Length: 240)
Name: NF8964_low_30
Description: NF8964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8964_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 28789624 - 28789415
Alignment:
| Q |
19 |
gaggcaccacctggtgagaagccagaaccagtgaagactcacctccgtaacatgatcattgtgcctgagatgattggtagcattattggtgtctacaatg |
118 |
Q |
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| T |
28789624 |
gaggcaccacctggtgagaagccagaaccagtgaggaatcacctccgtaacatgatcattgtgcctgagatgattggtagcattattggtgtctacaatg |
28789525 |
T |
|
| Q |
119 |
gaaagaccttcaatcaagttgaaattaaacctgaaatgattggccactatcttgctgaattctcgatctcttacaagcctgttaagcacgataggcctgg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
28789524 |
gaaagaccttcaatcaagttgaaattaaacctgaaatgattggccactatcttgctgaattctcgatctcttacaagccggttaagcacggtaggcctgg |
28789425 |
T |
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| Q |
219 |
tatctgtgct |
228 |
Q |
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|||| ||||| |
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| T |
28789424 |
tatcggtgct |
28789415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 25 - 221
Target Start/End: Original strand, 31247795 - 31247991
Alignment:
| Q |
25 |
ccacctggtgagaagccagaaccagtgaagactcacctccgtaacatgatcattgtgcctgagatgattggtagcattattggtgtctacaatggaaaga |
124 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
31247795 |
ccacctggtgagaagccagaacctgtgaggactcacctccgtaacatgatcattgtacctgagatgatcggtagcatcattggtgtctacaatggaaaga |
31247894 |
T |
|
| Q |
125 |
ccttcaatcaagttgaaattaaacctgaaatgattggccactatcttgctgaattctcgatctcttacaagcctgttaagcacgataggcctggtat |
221 |
Q |
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| T |
31247895 |
ccttcaaccaagttgaaattaagcctgaaatgattggtcactatttggctgaattctcaatctcttacaagcctgttaagcatggtaggcctggtat |
31247991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 44326045 - 44325843
Alignment:
| Q |
19 |
gaggcaccacctggtgagaagccagaaccagtgaagactcacctccgtaacatgatcattgtgcctgagatgattggtagcattattggtgtctacaatg |
118 |
Q |
| |
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||||||||||||||||||||||||||||| || | ||| || || ||||||||||||||||| |||||||||||||| ||||||||||| || ||||||| |
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| T |
44326045 |
gaggcaccacctggtgagaagccagaacctgttaggacccatcttcgtaacatgatcattgtacctgagatgattgggagcattattggagtgtacaatg |
44325946 |
T |
|
| Q |
119 |
gaaagaccttcaatcaagttgaaattaaacctgaaatgattggccactatcttgctgaattctcgatctcttacaagcctgttaagcacgataggcctgg |
218 |
Q |
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| T |
44325945 |
ggaagacctttaaccaggttgaaatcaaacctgagatgatcggtcattaccttgctgaattctcaatttcatacaagcctgttaagcacggtagacctgg |
44325846 |
T |
|
| Q |
219 |
tat |
221 |
Q |
| |
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||| |
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|
| T |
44325845 |
tat |
44325843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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