View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8964_low_34 (Length: 216)
Name: NF8964_low_34
Description: NF8964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8964_low_34 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 43077251 - 43077437
Alignment:
| Q |
13 |
cagagagaaagttagcattcctgcattaaaatcattcataaccatacaaggagcaggtgcagataaaacaattgttcaatggggtgacactgctctaact |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43077251 |
cagagagaaagttagcattcctgcattaaaatcattcataaccatacaaggagcaggtgcagataaaacaattgttcaatggggtgacactgctctaact |
43077350 |
T |
|
| Q |
113 |
cctaatcctggagcaaaaggacagacactaggaacttatggttctgcaacttttgcagtgaattcaccttatttcattgctaagaac |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43077351 |
cctaatcctggagcaaaaggacagacactaggaacttatggttcggcaacttttgcagtgaattcaccttatttcattgctaagaac |
43077437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 199
Target Start/End: Complemental strand, 33965867 - 33965691
Alignment:
| Q |
17 |
gagaaagttagcattcctgcattaaaatcattcataaccatacaaggagcaggtgcagataaaacaattgttcaatggggtgacactgctctaactccta |
116 |
Q |
| |
|
|||||||||| ||||||| | |||||||| |||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
33965867 |
gagaaagttaacattcctcctttaaaatccttcataaccatagaaggagatggtgcagatacaacaattgttcaatggggtgacactgctgcaac----- |
33965773 |
T |
|
| Q |
117 |
atcctggagcaaaaggacagacactaggaacttatggttctgcaacttttgcagtgaattcaccttatttcattgctaagaac |
199 |
Q |
| |
|
||||| ||| ||| | || | ||||| |||||||| |||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
33965772 |
-acctggtccaagagggaatccattgggaacatatggttcagcaacttttgcagttaattcaccttatttcattgccaagaac |
33965691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 190
Target Start/End: Complemental strand, 20311564 - 20311437
Alignment:
| Q |
57 |
tacaaggagcaggtgcagataaaacaattgttcaatggggtgacactgctctaactcctaatcctggagcaaaaggacagacactaggaactta----tg |
152 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||| ||| |||||||||| || | |||| |||||||||| || || |
|
|
| T |
20311564 |
tacaaggagcaggtgcagataaactaaa-gttcaatggggtgacacttctcaaactcctaatactagggcaa---------cactaggaacctacctatg |
20311475 |
T |
|
| Q |
153 |
gttctgcaacttttgcagtgaattcaccttatttcatt |
190 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
20311474 |
gttctgcaacatttgcagtgaattcaccttgtttcatt |
20311437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University