View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8964_low_38 (Length: 202)

Name: NF8964_low_38
Description: NF8964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8964_low_38
NF8964_low_38
[»] chr2 (1 HSPs)
chr2 (61-150)||(38062395-38062484)
[»] chr1 (10 HSPs)
chr1 (82-166)||(13500145-13500229)
chr1 (117-184)||(20355293-20355360)
chr1 (117-184)||(20555546-20555613)
chr1 (117-180)||(13411577-13411640)
chr1 (88-153)||(13572497-13572562)
chr1 (92-142)||(13605300-13605350)
chr1 (92-142)||(20583789-20583839)
chr1 (98-153)||(20561176-20561231)
chr1 (98-153)||(20358718-20358773)
chr1 (98-153)||(20552197-20552252)
[»] scaffold0006 (4 HSPs)
scaffold0006 (117-169)||(283801-283853)
scaffold0006 (92-142)||(133957-134007)
scaffold0006 (98-153)||(160013-160069)
scaffold0006 (117-182)||(39761-39827)
[»] scaffold0592 (2 HSPs)
scaffold0592 (117-182)||(1759-1825)
scaffold0592 (117-182)||(7963-8029)
[»] scaffold0291 (1 HSPs)
scaffold0291 (117-183)||(20395-20462)
[»] scaffold0886 (1 HSPs)
scaffold0886 (117-183)||(448-515)


Alignment Details
Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 61 - 150
Target Start/End: Original strand, 38062395 - 38062484
Alignment:
Q  61 tttactctttattagtgaaggaaaacaaataaatgtgtacctactactctctattagttgaagaaactccaatatttgaaatgaacagag 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38062395 tttactctttattagtgaaggaaaacaaataaatgtgtacctactactctctattagttgaagaaactccaatatttgaaatgaacagag 38062484  T

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Target: chr1 (Bit Score: 65; Significance: 9e-29; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 82 - 166
Target Start/End: Complemental strand, 13500229 - 13500145
Alignment:
Q  82 aaaacaaataaatgtgtacctactactctctattagttgaagaaactccaatatttgaaatgaacagagtgataacaaattaaaa 166  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||    
T  13500229 aaaataaataaatgcgtacctactactctctattagttgaagaaactccaatctttgaaatgaacagagtgagtacaaattaaaa 13500145  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 117 - 184
Target Start/End: Complemental strand, 20355360 - 20355293
Alignment:
Q  117 gttgaagaaactccaatatttgaaatgaacagagtgataacaaattaaaatgcagagaatatatataa 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20355360 gttgaagaaactccaatatttgaaatgaacagagtgataacaaattaaaatgcagagaatatacataa 20355293  T

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Target: chr1; HSP #3
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 117 - 184
Target Start/End: Original strand, 20555546 - 20555613
Alignment:
Q  117 gttgaagaaactccaatatttgaaatgaacagagtgataacaaattaaaatgcagagaatatatataa 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20555546 gttgaagaaactccaatatttgaaatgaacagagtgataacaaattaaaatgcagagaatatacataa 20555613  T

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Target: chr1; HSP #4
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 13411640 - 13411577
Alignment:
Q  117 gttgaagaaactccaatatttgaaatgaacagagtgataacaaattaaaatgcagagaatatat 180  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  13411640 gttgaagaaactccaatctttgaaatgaacagagtgataacaaattaaaatgcagagaatatat 13411577  T

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Target: chr1; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 88 - 153
Target Start/End: Complemental strand, 13572562 - 13572497
Alignment:
Q  88 aataaatgtgtacctactactctctattagttgaagaaactccaatatttgaaatgaacagagtga 153  Q
    |||||||| |||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||    
T  13572562 aataaatgcgtacctactactctctataagttgaagaaactccaatcttttaaatgaacagagtga 13572497  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 92 - 142
Target Start/End: Complemental strand, 13605350 - 13605300
Alignment:
Q  92 aatgtgtacctactactctctattagttgaagaaactccaatatttgaaat 142  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  13605350 aatgcgtacctactactctctattagttgaagaaactccaatctttgaaat 13605300  T

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Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 92 - 142
Target Start/End: Original strand, 20583789 - 20583839
Alignment:
Q  92 aatgtgtacctactactctctattagttgaagaaactccaatatttgaaat 142  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  20583789 aatgcgtacctactactctctattagttgaagaaactccaatctttgaaat 20583839  T

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Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 98 - 153
Target Start/End: Original strand, 20561176 - 20561231
Alignment:
Q  98 tacctactactctctattagttgaagaaactccaatatttgaaatgaacagagtga 153  Q
    ||||||||||||| ||||||||||||||||||||||  |||||||||||| |||||    
T  20561176 tacctactactctttattagttgaagaaactccaatccttgaaatgaacaaagtga 20561231  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 153
Target Start/End: Complemental strand, 20358773 - 20358718
Alignment:
Q  98 tacctactactctctattagttgaagaaactccaatatttgaaatgaacagagtga 153  Q
    |||||| |||||| ||||||||||||||||||||||  |||||||||||| |||||    
T  20358773 tacctaatactctttattagttgaagaaactccaatccttgaaatgaacaaagtga 20358718  T

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Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 153
Target Start/End: Original strand, 20552197 - 20552252
Alignment:
Q  98 tacctactactctctattagttgaagaaactccaatatttgaaatgaacagagtga 153  Q
    |||||| |||||| ||||||||||||||||||||||  |||||||||||| |||||    
T  20552197 tacctattactctttattagttgaagaaactccaatccttgaaatgaacaaagtga 20552252  T

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Target: scaffold0006 (Bit Score: 53; Significance: 1e-21; HSPs: 4)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 283853 - 283801
Alignment:
Q  117 gttgaagaaactccaatatttgaaatgaacagagtgataacaaattaaaatgc 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  283853 gttgaagaaactccaatatttgaaatgaacagagtgataacaaattaaaatgc 283801  T

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Target: scaffold0006; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 92 - 142
Target Start/End: Complemental strand, 134007 - 133957
Alignment:
Q  92 aatgtgtacctactactctctattagttgaagaaactccaatatttgaaat 142  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  134007 aatgcgtacctactactctctattagttgaagaaactccaatctttgaaat 133957  T

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Target: scaffold0006; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 153
Target Start/End: Complemental strand, 160069 - 160013
Alignment:
Q  98 tacctactactctct-attagttgaagaaactccaatatttgaaatgaacagagtga 153  Q
    ||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||    
T  160069 tacctactactctcttattagttgaagaaactccaatcttttaaatgaacagagtga 160013  T

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Target: scaffold0006; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 39827 - 39761
Alignment:
Q  117 gttgaagaaactccaatatttgaaatgaacagagtgataacaaatt-aaaatgcagagaatatatat 182  Q
    |||||||||||| | || ||||||||||||||| |||||  ||||| ||||||||| ||||||||||    
T  39827 gttgaagaaacttcgatctttgaaatgaacagactgataggaaattaaaaatgcagcgaatatatat 39761  T

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Target: scaffold0592 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: scaffold0592
Description:

Target: scaffold0592; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 1825 - 1759
Alignment:
Q  117 gttgaagaaactccaatatttgaaatgaacagagtgataacaaattaa-aatgcagagaatatatat 182  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| | |||||| |||||||||    
T  1825 gttgaagaaactccaatatttgaaatgaacagtgtgataacaaattaatagtgcagataatatatat 1759  T

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Target: scaffold0592; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 8029 - 7963
Alignment:
Q  117 gttgaagaaactccaatatttgaaatgaacagagtgataacaaattaa-aatgcagagaatatatat 182  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| | |||||| |||||||||    
T  8029 gttgaagaaactccaatatttgaaatgaacagtgtgataacaaattaatagtgcagataatatatat 7963  T

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Target: scaffold0291 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 117 - 183
Target Start/End: Original strand, 20395 - 20462
Alignment:
Q  117 gttgaagaaactccaatatttgaaatgaacagagtgataacaaatt-aaaatgcagagaatatatata 183  Q
    ||||||||||||| ||| ||||||||||||||| |||||  ||||| |||||||||||||||||||||    
T  20395 gttgaagaaactctaatctttgaaatgaacagactgataggaaattaaaaatgcagagaatatatata 20462  T

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Target: scaffold0886 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 183
Target Start/End: Original strand, 448 - 515
Alignment:
Q  117 gttgaagaaactccaatatttgaaatgaacagagtgataacaaatt-aaaatgcagagaatatatata 183  Q
    |||||||||||||| || ||||||||||||||| |||||  ||||| ||||||||| |||||||||||    
T  448 gttgaagaaactccgatctttgaaatgaacagactgataggaaattaaaaatgcagcgaatatatata 515  T

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