View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8964_low_9 (Length: 378)

Name: NF8964_low_9
Description: NF8964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8964_low_9
NF8964_low_9
[»] chr4 (13 HSPs)
chr4 (1-363)||(8411232-8411594)
chr4 (11-359)||(8041020-8041362)
chr4 (19-360)||(9138212-9138547)
chr4 (72-360)||(8416837-8417128)
chr4 (42-359)||(8035637-8035948)
chr4 (78-364)||(8358834-8359117)
chr4 (11-361)||(43144077-43144424)
chr4 (234-354)||(8404193-8404316)
chr4 (11-136)||(8404429-8404554)
chr4 (154-211)||(8404339-8404396)
chr4 (11-99)||(8418916-8419004)
chr4 (154-215)||(8355852-8355913)
chr4 (78-114)||(9576708-9576744)
[»] chr2 (2 HSPs)
chr2 (11-360)||(33084387-33084730)
chr2 (78-128)||(24845660-24845710)
[»] chr7 (3 HSPs)
chr7 (294-360)||(5476735-5476801)
chr7 (154-208)||(5476902-5476956)
chr7 (73-134)||(5476994-5477055)


Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 8411594 - 8411232
Alignment:
Q  1 actatatatcaatatagatgtgaaagtacactaaagtcacttacctcttgtattgtttgaaggacagaaccgccaaatttcaaaatctttacattggcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8411594 actatatatcaatatagatgtgaaagtacactaaagtcacttacctcttgtattgtttgaaggacagaaccgccaaatttcaaaatctttacattggcaa 8411495  T
Q  101 gcacttgcagccatcttacgaagattgaagcttcctcgtcctcgttacaggaaaagccatacatatttacttgttgaagaaaagaaagattgcatgtgga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8411494 gcacttgcagccatcttacgaagattgaagcttcctcgtcctcgttacaggaaaagccatacatatttacttgttgaagaaaagaaagattgcatgtgga 8411395  T
Q  201 ggccaagagttgatgnnnnnnntaactactgtcgatagtaaaagaactaagatatggagtagaaagcgaaaattggtcagctaatacattacttatagtc 300  Q
    |||||||||||||||       |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8411394 ggccaagagttgatgaaaaaaataactactatcgatagtaaaagaactaagatatggagtagaaagcgaaaattggtcagctaatacattacttatagtc 8411295  T
Q  301 aaactggataatgtctgattagatatgcagaggacttgtgcatcttcaatcaaagaacaatac 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8411294 aaactggataatgtctgattagatatgcagaggacttgtgcatcttcaatcaaagaacaatac 8411232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 359
Target Start/End: Original strand, 8041020 - 8041362
Alignment:
Q  11 aatatagatgtgaaagtacactaaagtcacttacctcttgtattgtttgaaggacagaaccgccaaatttcaaaatctttacattggcaagcacttgcag 110  Q
    ||||||||||||||||||||| | |||||| ||||| ||||||||||| || |||||||  | ||||| ||||||||||||||||||| |||||||||||    
T  8041020 aatatagatgtgaaagtacacaacagtcacctaccttttgtattgtttcaatgacagaatagtcaaatctcaaaatctttacattggccagcacttgcag 8041119  T
Q  111 ccatcttacgaagattgaagcttcctcgtcctcgttacaggaaaagccatacatatttacttgttgaagaaaagaaagattgcatgtggaggccaagagt 210  Q
    |||||||| |||||||||||||||| |||      ||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8041120 ccatcttaagaagattgaagcttccacgt------tattggaaatgccatacatatttacttgttgaagaaaagaaagattgcatgtggaggccaagagt 8041213  T
Q  211 tgatgnnnnnnntaactactgtcgatagtaaaagaactaagatatggagtagaaagcgaaaattggtcagctaatacattacttatagtcaaactggata 310  Q
    ||| |        ||| ||  | |||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||   ||||||||||| ||||||    
T  8041214 tgacgaaaaaaagaaccaccatggatagtaaaagaactaagatttggagtagaaagcgaaaattggacagctgatacataggttatagtcaaattggata 8041313  T
Q  311 atgtctgattagatatgcagaggacttgtgcatcttcaatcaaagaaca 359  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8041314 atgtctgattagatatgcagaggacttgtgcatcctcaatcaaagaaca 8041362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 19 - 360
Target Start/End: Original strand, 9138212 - 9138547
Alignment:
Q  19 tgtgaaagtacactaaagtcacttacctcttgtattgtttgaaggacagaaccgccaaatttcaaaatctttacattggcaagcacttgcagccatctta 118  Q
    ||||||||||||||||||| |||||| | ||||||| | | || ||||| |   ||||||| ||||||||| ||||||||||||||||||||||||||||    
T  9138212 tgtgaaagtacactaaagtgacttacattttgtattttctcaaagacagcataaccaaattccaaaatcttgacattggcaagcacttgcagccatctta 9138311  T
Q  119 cgaagattgaagcttcctcgtcctcgttacaggaaaagccatacatatttacttgttgaagaaaagaaagattgcatgtggaggccaagagttgatgnnn 218  Q
     |||||||||||||||| |||      ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||  ||  ||       
T  9138312 agaagattgaagcttccccgt------tattggaaaagccatacatatttacttgttgaagaaaagaaagattgcatgtggaggataaggatttctgaaa 9138405  T
Q  219 nnnntaactactgtcgatagtaaaagaactaagatatggagtagaaagcgaaaattggtcagctaatacattacttatagtcaaactggataatgtctga 318  Q
          || |   |||||||||||||||||||||| ||||| |||||| ||| ||||||||||| |||| || |||||||||||| |||||| |||||||    
T  9138406 aataggacaatcatcgatagtaaaagaactaagatttggagcagaaagtgaatattggtcagctgatacttttcttatagtcaaattggatagtgtctga 9138505  T
Q  319 ttagatatgcagaggacttgtgcatcttcaatcaaagaacaa 360  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  9138506 ttagatatgcagaggacttgtgcatcctcaatcaaagaacaa 9138547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 72 - 360
Target Start/End: Complemental strand, 8417128 - 8416837
Alignment:
Q  72 gccaaatttcaaaatctttacattggcaagcacttgcagccatcttacgaagattgaagcttcctcgtcctcgttacaggaaaagccatacatat----- 166  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||       ||  | || |||||| ||||          
T  8417128 gccaactttcaaaatctttacattggcaaacacttgcagccatcttaagaagattgaagcttccccga------tagtgaaatagccatccataccagta 8417035  T
Q  167 ----ttacttgttgaagaaaagaaagattgcatgtggaggccaagagttgatgnnnnnnntaactactgtcgatagtaaaagaactaagatatggagtag 262  Q
        ||||||||||||||||||||||||||||||||||||||||| |||||||        ||||||  | |||||||||||||||||||| ||||||||    
T  8417034 aaagttacttgttgaagaaaagaaagattgcatgtggaggccaagggttgatgaaaaagagaactacctttgatagtaaaagaactaagatttggagtag 8416935  T
Q  263 aaagcgaaaattggtcagctaatacattacttatagtcaaactggataatgtctgattagatatgcagaggacttgtgcatcttcaatcaaagaacaa 360  Q
    |||||||||||||||||||| |||| |    |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8416934 aaagcgaaaattggtcagctgatacgtaggatatagtcaaattggataatgtctgattagatatgcagaggacttgtgcatcctcaatcaaagaacaa 8416837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 42 - 359
Target Start/End: Original strand, 8035637 - 8035948
Alignment:
Q  42 tacctcttgtattgtttgaaggacagaaccgccaaatttcaaaatctttacattggcaagcacttgcagccatcttacgaagattgaagcttcctcgtcc 141  Q
    ||||| ||| ||||| | || |||||||  ||||||||||||||||||||||||||||||||||||||||||  ||| ||||||  |||||||| | |      
T  8035637 taccttttggattgtatcaatgacagaatagccaaatttcaaaatctttacattggcaagcacttgcagccaatttaagaagatcaaagcttccgcat-- 8035734  T
Q  142 tcgttacaggaaaagccatacatatttacttgttgaagaaaagaaagattgcatgtggaggccaagagttgatgnnnnnnntaactactgtcgatagtaa 241  Q
        ||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||  ||         || |    |||||||||    
T  8035735 ----tattggaaaagtcatacatatttacttgttgaagaaaagaaagattgcatgtggaggataagagtttctgaaaaataggacaatgcccgatagtaa 8035830  T
Q  242 aagaactaagatatggagtagaaagcgaaaattggtcagctaatacattacttatagtcaaactggataatgtctgattagatatgcagaggacttgtgc 341  Q
    ||||||||||   |||||||||||||||| |||| ||||||| ||||     |||||||||| |||||| ||||||||||||||||||||||||||||||    
T  8035831 aagaactaagccttggagtagaaagcgaatattgttcagctagtacagatgatatagtcaaattggatagtgtctgattagatatgcagaggacttgtgc 8035930  T
Q  342 atcttcaatcaaagaaca 359  Q
    ||| ||||||||||||||    
T  8035931 atcctcaatcaaagaaca 8035948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 78 - 364
Target Start/End: Original strand, 8358834 - 8359117
Alignment:
Q  78 tttcaaaatctttacattggcaagcacttgcagccatcttacgaagattgaagcttcctcgtcctcgttacaggaaaagccatacatatttacttgttga 177  Q
    |||||||||||  |||||||||||||||||||||||| ||| |||||||||||||| | ||||  |   || ||| |||  ||  |||||||||||||||    
T  8358834 tttcaaaatctcgacattggcaagcacttgcagccattttaagaagattgaagctttcccgtcacc---accggagaagtaatcaatatttacttgttga 8358930  T
Q  178 agaaaagaaagattgcatgtggaggccaagagttgatgnnnnnnntaactactgtc-gatagtaaaagaactaagatatggagtagaaagcgaaaattgg 276  Q
    |||||||||||||| ||||||||||  ||||||||  |         || |||    |||||||||| ||||||||| ||||||||||||||||||||||    
T  8358931 agaaaagaaagattacatgtggaggataagagttgccgaaaaatagcac-actccgagatagtaaaaaaactaagatttggagtagaaagcgaaaattgg 8359029  T
Q  277 tcagctaatacattacttatagtcaaactggataatgtctgattagatatgcagaggacttgtgcatcttcaatcaaagaacaatact 364  Q
    ||||||||||| |    |||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  8359030 tcagctaatacgtaggatatagtcaaattggataatgtctgattagatatgcagaggatttgtgcatcatcaatcaaagaacaatact 8359117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 11 - 361
Target Start/End: Original strand, 43144077 - 43144424
Alignment:
Q  11 aatatagatgtgaaagtacactaaagtcacttacctcttgtattgtttgaaggacagaaccgccaaatttcaaaatctttacattggcaagcacttgcag 110  Q
    |||| ||| ||||||||| | |||||| |||||| | |||||||||||||| || ||||   |||| ||||||||||||||| |||||||||||||||||    
T  43144077 aataaagaggtgaaagtatattaaagtaacttacattttgtattgtttgaatgagagaataaccaattttcaaaatctttacgttggcaagcacttgcag 43144176  T
Q  111 ccatcttacgaagattgaagcttcctcgtcctcgttacaggaaaagccatacatatttacttgttgaagaaaagaaagattgcatgtggaggccaagagt 210  Q
    |||||||| |||| |||||||||||| |   | | |  |||| | |||||  ||||||||||||||||||||||||||||||||||| ||||  |||||     
T  43144177 ccatcttaagaaggttgaagcttccttg---tggatgtaggagaggccatcaatatttacttgttgaagaaaagaaagattgcatgttgaggataagagc 43144273  T
Q  211 tgatgnnnnnnntaactactgtcgatagtaaaagaactaagatatggagtagaaagcgaaaattggtcagctaatacattacttatagtcaaactggata 310  Q
      |||        ||||||    || |||||||||  |||||| |||||||||||| |||||||| | ||||   |||  |  |||||| |||||||| |    
T  43144274 ctatgaaaaacaaaactacccaagaaagtaaaagacttaagatttggagtagaaagtgaaaattgctgagctgcaacagaagatatagttaaactggaaa 43144373  T
Q  311 atgtctgattagatatgcagaggacttgtgcatcttcaatcaaagaacaat 361  Q
     ||  | |||||||||||| ||||||| |||||| | ||||||||||||||    
T  43144374 gtgcattattagatatgcaaaggacttttgcatcctgaatcaaagaacaat 43144424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 234 - 354
Target Start/End: Complemental strand, 8404316 - 8404193
Alignment:
Q  234 gatagtaaaagaactaagatatggagtagaaagcgaaaattggtcagctaat---acattacttatagtcaaactggataatgtctgattagatatgcag 330  Q
    |||||||||||||||||||| ||||||||||||||||||||  |||||| ||   |  | |  ||||||||||||||| | |||||||||||||||||||    
T  8404316 gatagtaaaagaactaagatttggagtagaaagcgaaaattcatcagctgatgatatgtgaaatatagtcaaactggacagtgtctgattagatatgcag 8404217  T
Q  331 aggacttgtgcatcttcaatcaaa 354  Q
    |||||||||||||| |||||||||    
T  8404216 aggacttgtgcatcctcaatcaaa 8404193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 11 - 136
Target Start/End: Complemental strand, 8404554 - 8404429
Alignment:
Q  11 aatatagatgtgaaagtacactaaagtcacttacctcttgtattgtttgaaggacagaaccgccaaatttcaaaatctttacattggcaagcacttgcag 110  Q
    |||| ||| ||||||||| |||||||| |||||| |  | ||||| ||||| ||||||    |||| ||||||||||||||| |||||||||||||| ||    
T  8404554 aataaagaagtgaaagtatactaaagtgacttacatagtctattgcttgaatgacagagtaaccaattttcaaaatctttacgttggcaagcacttgaag 8404455  T
Q  111 ccatcttacgaagattgaagcttcct 136  Q
    ||| |||| ||||| |||||| ||||    
T  8404454 ccaacttaagaagactgaagcatcct 8404429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 8404396 - 8404339
Alignment:
Q  154 aagccatacatatttacttgttgaagaaaagaaagattgcatgtggaggccaagagtt 211  Q
    |||||||  ||||||||||||||||||||||||||||||| ||||||||  |||||||    
T  8404396 aagccatcaatatttacttgttgaagaaaagaaagattgcttgtggaggataagagtt 8404339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 8419004 - 8418916
Alignment:
Q  11 aatatagatgtgaaagtacactaaagtcacttacctcttgtattgtttgaaggacagaaccgccaaatttcaaaatctttacattggca 99  Q
    |||||| ||||||||||||||||||||||||||| | || ||||||||||| || |  |   ||||||| |||||||||||| ||||||    
T  8419004 aatatatatgtgaaagtacactaaagtcacttacattttttattgtttgaatgataccataaccaaattccaaaatctttacgttggca 8418916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 215
Target Start/End: Original strand, 8355852 - 8355913
Alignment:
Q  154 aagccatacatatttacttgttgaagaaaagaaagattgcatgtggaggccaagagttgatg 215  Q
    ||||||| ||| || |||||||||||||||||||||||||| ||||||  || |||||||||    
T  8355852 aagccatgcattttaacttgttgaagaaaagaaagattgcaagtggagaacaggagttgatg 8355913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 114
Target Start/End: Original strand, 9576708 - 9576744
Alignment:
Q  78 tttcaaaatctttacattggcaagcacttgcagccat 114  Q
    |||||||||||| ||||||||||||||||||||||||    
T  9576708 tttcaaaatcttgacattggcaagcacttgcagccat 9576744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 11 - 360
Target Start/End: Complemental strand, 33084730 - 33084387
Alignment:
Q  11 aatatagatgtgaaagtacactaaagtcacttacctcttgtattgtttgaaggacagaaccgccaaatttcaaaatctttacattggcaagcacttgcag 110  Q
    |||||||||| ||||||||||||||||||||||| | ||||||| | | || || ||||   ||||||| ||||||||||||||||| ||||||||||||    
T  33084730 aatatagatgcgaaagtacactaaagtcacttacattttgtattttctcaatgatagaataaccaaattccaaaatctttacattggaaagcacttgcag 33084631  T
Q  111 ccatcttacgaagattgaagcttcctcgtcctcgttacaggaaaagccatacatatttacttgttgaagaaaagaaagattgcatgtggaggccaagagt 210  Q
    |||||||| |||||||||||||||  |||| | |      |||||||| |||||||||||||||||||||||||||||||||||||||||||  |||  |    
T  33084630 ccatcttaggaagattgaagcttctccgtcattg------gaaaagccgtacatatttacttgttgaagaaaagaaagattgcatgtggaggataaggat 33084537  T
Q  211 tgatgnnnnnnntaactactgtcgatagtaaaagaactaagatatggagtagaaagcgaaaattggtcagctaatacattacttatagtcaaactggata 310  Q
    |  ||         || |     |||||||||||||||||||| |||||||||||| ||| ||||||||| | |||  | || |||||||||| ||||||    
T  33084536 ttctgaaaaataggacaatccctgatagtaaaagaactaagatttggagtagaaagtgaatattggtcagttgatatgtaacatatagtcaaattggata 33084437  T
Q  311 atgtctgattagatatgcagaggacttgtgcatcttcaatcaaagaacaa 360  Q
     |||||||||||| ||| |||||||||||||||| |||||||||||||||    
T  33084436 gtgtctgattagacatgtagaggacttgtgcatcctcaatcaaagaacaa 33084387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 24845710 - 24845660
Alignment:
Q  78 tttcaaaatctttacattggcaagcacttgcagccatcttacgaagattga 128  Q
    |||||||||||| ||||||| |||||||||||||||| ||| |||||||||    
T  24845710 tttcaaaatcttcacattggaaagcacttgcagccattttaagaagattga 24845660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 294 - 360
Target Start/End: Complemental strand, 5476801 - 5476735
Alignment:
Q  294 tatagtcaaactggataatgtctgattagatatgcagaggacttgtgcatcttcaatcaaagaacaa 360  Q
    |||||||||| |||| | ||||||||||||||||||||||||| ||||||| ||||||||| |||||    
T  5476801 tatagtcaaattggacagtgtctgattagatatgcagaggactagtgcatcctcaatcaaataacaa 5476735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 5476956 - 5476902
Alignment:
Q  154 aagccatacatatttacttgttgaagaaaagaaagattgcatgtggaggccaaga 208  Q
    |||||||  |||||||||||||||||||| |||||||||||||| |||| |||||    
T  5476956 aagccatcaatatttacttgttgaagaaaggaaagattgcatgttgaggacaaga 5476902  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 5477055 - 5476994
Alignment:
Q  73 ccaaatttcaaaatctttacattggcaagcacttgcagccatcttacgaagattgaagcttc 134  Q
    |||| ||||||||||||||| || ||||||||||| ||||| |||| ||||| |||||||||    
T  5477055 ccaattttcaaaatctttacgttcgcaagcacttgaagccaacttaagaagactgaagcttc 5476994  T

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