View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8965_high_1 (Length: 612)
Name: NF8965_high_1
Description: NF8965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8965_high_1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 12 - 612
Target Start/End: Complemental strand, 39378803 - 39378203
Alignment:
| Q |
12 |
ggtgattccttgcgttacctgaatgtttcttacaacagattttccggtaaaattccaccggaattcgccgagaaaattccgagtaacgcaaccgttgatc |
111 |
Q |
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| T |
39378803 |
ggtgattccttgcgttacttgaatgtttcctacaacagattttccggtgaaattccacgggaattcgccgagaaaattcccagtaacgcaaccgttgatc |
39378704 |
T |
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| Q |
112 |
tatcattcaacaatctcactggtgaaataccagagtcccctgttttgttgaaccaggaaacaaaagtgttttctggtaatagtgatctatgtggtgaacc |
211 |
Q |
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| T |
39378703 |
tatcattcaacaatctcactggcgaaataccggagtcccctgttttgttgaaccaggaaacaaaagtgttttctggtaatagtgatctatgtggtgaacc |
39378604 |
T |
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| Q |
212 |
aatgaaaaatccttgttctattccttcttctccttcttctaatcctcaaggttcttctcctcctgcaatcgccgcaatgccgaagaattttgataatgat |
311 |
Q |
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| T |
39378603 |
aatgaaaaatccttgttctattccttcttctccttcttctaatcctcaaggttcttctcctcctgcactcgccgcaatgccgaagaattttgataatgat |
39378504 |
T |
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| Q |
312 |
tctcctcaatcaccaacaacagagtcttcagagaagaaacagagtggtttgagaaaaggaactattataggaattgttattggtgatttcgttggaattg |
411 |
Q |
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| T |
39378503 |
tctcctcaatcacaaacaacagagtcttcagagaagaaacagagtggtttgagaaaaggaactattataggaattgttattggtgatttcgttggaattg |
39378404 |
T |
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| Q |
412 |
gaatcttagctatggtttttgtttatgtttataagctaaagagnnnnnnngatgcggaaaatgcaataaaaaatgaagctgctactacaagaagtgagaa |
511 |
Q |
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| T |
39378403 |
gaatcttagctatggtttttgtttatgtttataagctaaagagaaaaaaagatgcggaaaatgcaataaaaaatgaagttgctactgcaagaagtgagaa |
39378304 |
T |
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| Q |
512 |
ttcttcttcaaccttagagacaaaagggtttacaaggtggtcttgtttaagaaaaagaacagaagatgaagaatcctcagagacacaaagttcttcagat |
611 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
39378303 |
ttcttcatcaaccttagagacaaaagggtttacaaggtggtcttgtttaagaaaaagaacagaagatgaagaatcctcggagacacaaagttcttcagat |
39378204 |
T |
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| Q |
612 |
a |
612 |
Q |
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| T |
39378203 |
a |
39378203 |
T |
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