View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8965_high_2 (Length: 491)
Name: NF8965_high_2
Description: NF8965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8965_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 14 - 477
Target Start/End: Original strand, 43561291 - 43561760
Alignment:
| Q |
14 |
agagaagaagaaagagtgatgaaattcagttgaagggtacttatattacactgatgaaagtgaggcaaac----aataatctaaacttcacaaaacc--a |
107 |
Q |
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| T |
43561291 |
agagaagaagaaagagtgatgaaattcagttgaagggtacttatattacactgatgaaagtgaggcaaaccaacaataatctaaacttcacaaaacccta |
43561390 |
T |
|
| Q |
108 |
aaccaaatatggcattgctgaatatcacaactaaactatgttctttttattataacaaaaaactctgttcttcaaccatcatgtcacataaactttctac |
207 |
Q |
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| T |
43561391 |
aaccaaatatggcattgctgaatatcacaactaaactatgttctttttattataacaaaaaactctgttcttcaaccatcatgtcacataaactttctac |
43561490 |
T |
|
| Q |
208 |
tgacggatacaaccaactttcaaccgagtcaatcaacataaactcacttctcacctcaaccgagttataactctcttctatattaggaagctcaacaatc |
307 |
Q |
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| T |
43561491 |
tgacggatacaaccaactttcaaccgagtcaatcaacataaactcacttctcacctcaaccgagttataactctcttctatattaggaagctcaacaatc |
43561590 |
T |
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| Q |
308 |
tcactaagctctgaagactctgatgaatatgaaggtgagtcagagacttcagagctgagtgagattgttgagcgcaatatttgagaatcaaattccacca |
407 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43561591 |
tcactaagctctgtagactctgatgaatatgaaggtgagtcagagacttcagagctgagtgagattgttgagcgcaatatttgagaatcaaattccacca |
43561690 |
T |
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| Q |
408 |
tggcagcagcttctgcagctgcaacttgaatgtcacgtggagacaacgttgttggtcttggaagcatgtg |
477 |
Q |
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| T |
43561691 |
tggcagcagcttctgcagctgcaacttgaatgtcacgtggagacaacgttgttggtcttggaagcatgtg |
43561760 |
T |
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