View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8965_high_4 (Length: 411)
Name: NF8965_high_4
Description: NF8965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8965_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 160 - 406
Target Start/End: Complemental strand, 55072388 - 55072124
Alignment:
| Q |
160 |
ttctttataaaatgcaaggttccctagtctctcgattttcaagtaccttgcatgtgtttcaagatcatccagagttttagggtcaacatcaacaaattga |
259 |
Q |
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| T |
55072388 |
ttctttataaaatgcaaggttccctagtctctcgattttcaagtaccttgcatgtgtttcaagatcatccagagttttagggtcaacatcaacaaattga |
55072289 |
T |
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| Q |
260 |
gcatcccagtccttgagatcaacatacttct------------------tgcagtattcaacgaccatgctcaacattttgctattcacttcatcaacag |
341 |
Q |
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| T |
55072288 |
gcatcccagatcttgatatcaacatacttctgtcttttgtcgtgcttcttgcagtattcaacgaccatgctcaacattttgctattcacttcatcaacag |
55072189 |
T |
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| Q |
342 |
aaatggtatcaacatcaccaatcggaatggtctcaatatcgataatgtcctcaaatctttttgac |
406 |
Q |
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| T |
55072188 |
aaatggtatcaacatcaccaatcggaatggtctcaatatcgataatgtcctcaaatctttttgac |
55072124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 5 - 168
Target Start/End: Complemental strand, 55072875 - 55072713
Alignment:
| Q |
5 |
caggatcatagagtaaaagtaaaaagaagtttgcatgttgtaaaatctaaagactctactcgtggttctcttctaatgacttgaagtttgagtcttcttg |
104 |
Q |
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| T |
55072875 |
caggatcatagagtaaaagtaaaaagaagtttgcatgttgtaaaatctaaagactctactcgtggttctcttctaatgacttgaagtttgagtcttcttg |
55072776 |
T |
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| Q |
105 |
agcggcatagaactggacgagtttcctctggtgtcttgtcttttatcaagtcaaattctttata |
168 |
Q |
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| T |
55072775 |
agcggcatagaactggacgag-ttcctctggtgtcttgtcttttatcaagtcaaattttttata |
55072713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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