View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8965_high_6 (Length: 311)

Name: NF8965_high_6
Description: NF8965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8965_high_6
NF8965_high_6
[»] chr4 (1 HSPs)
chr4 (1-294)||(39377920-39378213)


Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 39378213 - 39377920
Alignment:
Q  1 ttcttcagatagtgacgtggaaatatcacnnnnnnntgttgatgttgagaatcaaaagcaaggtgagaataaagctggtacgggttcgggtacgggcact 100  Q
    |||||||||||||||||||||||||||||       |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39378213 ttcttcagatagtgacgtggaaatatcacaaaaaaatgttgatgctgagaatcaaaagcaaggtgagaataaagctggtacgggttcgggtacaggcact 39378114  T
Q  101 ctggtcatagttgatggtgaaagagagcttgaagtggaaacacttttgaaagcttctgcgtatattttaggagctactggttcaagtataatgtataaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39378113 ctggtcatagttgatggtgaaagagagcttgaagtggaaacacttttgaaagcttctgcgtatattttaggagctactggttcaagtataatgtataaag 39378014  T
Q  201 ctgttcttgaagatggaacttctttagcagttcgtagaattggtgaaaatggtgttgaaaggttcaaggattttgagaatcaagttcgggttat 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39378013 ctgttcttgaagatggaacttctttagcagttcgtagaattggtgaaaatggtgttgaaaggttcaaggattttgagaatcaagttcgggttat 39377920  T

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