View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8965_high_7 (Length: 270)
Name: NF8965_high_7
Description: NF8965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8965_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 40 - 255
Target Start/End: Original strand, 15673752 - 15673968
Alignment:
| Q |
40 |
aggaatagagattgaatcttagaactctttcgttat-ctcatttaacgtctcaactcataccactgaactacatttttggatatcttttggcctatctaa |
138 |
Q |
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| T |
15673752 |
aggaatagagattgaaccctagaactctttcgttatactcatttaacgtctcaactcataccaatgaactacatttttggatatcttttggcctatctaa |
15673851 |
T |
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| Q |
139 |
tatgtttatgtggacaggggtgaacaaatatacttccaaaacaaactatagtggatttttatacttcacacacggtgctcatttattattggataaaaat |
238 |
Q |
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| T |
15673852 |
tatgtttatgtggacaggggtgaacaaatatacttccaaaacaaactatagtggaattttatacttcacacacggtactcatttattattggataaaaat |
15673951 |
T |
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| Q |
239 |
tgtaaaatatgcttcat |
255 |
Q |
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| T |
15673952 |
tgtaaaatatgcttcat |
15673968 |
T |
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