View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8965_low_1 (Length: 970)
Name: NF8965_low_1
Description: NF8965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8965_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 815; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 815; E-Value: 0
Query Start/End: Original strand, 9 - 951
Target Start/End: Complemental strand, 40124284 - 40123342
Alignment:
| Q |
9 |
tgagatggacatcatttaatttaaaaaa-tcaccttcttcttagttttgttgtcaatgaacgggtaaactattttccacactttcataaaaatgtacggt |
107 |
Q |
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||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40124284 |
tgagatgtatatcatttaatttaaaaaaatcaccttcttcttagttttgttgtcaatgaacgggtaaactattttccacactttcataaaaatgtacggt |
40124185 |
T |
|
| Q |
108 |
gcatggagaataaacaacttccccaatctttcagggtagtaatcctgcatccaagaaattaagaaccataagatctgagtgctatatatgaagcttccaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40124184 |
gcatggagaataaacaacttccccaatctttcagggtagtaatcctgcatccaagaaattaagaaccataagatctgagtgctatatatgaagcttccaa |
40124085 |
T |
|
| Q |
208 |
ctacttcacaattcacacacaaacataatgctataacgatatacctgcaaaatggagagagcaccaatgtatccacgcaaatcactatttgagtaacccc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40124084 |
ctacttcacaattcacacacaaacataatgctataacgatatacctgcaaaatggagagagcaccaatgtatccacgcaaatcactatttgagtaacccc |
40123985 |
T |
|
| Q |
308 |
atcccttgagttctgctataccaacaaatttttcttccccagggggcatgctgatacatcaaatgatatgttactaatcaatattctaaccaatttcaca |
407 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40123984 |
atcccttgagttctgctataccaacaaatttttcttccccagggggcatgctgatacatcaaatgatatgttactaatcaatattctaaccgatttcaca |
40123885 |
T |
|
| Q |
408 |
gt------tttattgtactggaataaggaattaattaccttgcacatagtttatcaagaatataaactgcaaaccctgtatcacaaagaaaattgcttgc |
501 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40123884 |
gttttagttttattgtactggaataaggaattaattaccttgcacatagtttatcaagaatataaactgcaaaccctgtatcacaaagaaaattgcttgc |
40123785 |
T |
|
| Q |
502 |
agttgataaacttgttaatgagtggatacaaataatcatatctagcataccatatatatacatactacataggagcaccaggaattaaacattacatgat |
601 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||| |
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| T |
40123784 |
agttgacaaacttgttaatgagtggatacaaataatcatatctagcataccatatata-------tacatagtagcaacaggaattaaacattacatgat |
40123692 |
T |
|
| Q |
602 |
tatctttttgacaatcaataaattgcaactactcatctagtctcttaatgccaagggatctcctcgagcagaaatgccgagagattttggccattttggg |
701 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40123691 |
tatctttttgacaatcaataaattgcaa--------ctagtctcttaatgccaagggatctcctcgagcagaaatgccgagagattttggccattttggg |
40123600 |
T |
|
| Q |
702 |
ggatttgaactctcaactatagggcagtggaagtccaaataaatattcttaaccaattgtgccaacttctgttggcatgtgaattcaatttaatgttaat |
801 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40123599 |
ggatttgaactctcaactatagggcagtggaagtccaaataaatattcttaaccaattgtgccaacttctgttggcatgtgaattcaatttaatgttaat |
40123500 |
T |
|
| Q |
802 |
aagatatagggataggaaatatcttcaatgtttatgt--------agtaaaaacatacgtttgaattcatctagaccatctttcttttgaaaatgtcttc |
893 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40123499 |
aagatatagggataggaaatatcttcaatgtttatgtacttgataagtaaaaacatacgtttgaattcatctagaccatctttcttttgaaaatgccttc |
40123400 |
T |
|
| Q |
894 |
caccaaagacaagaagtataggtcgaccaatcttgtcatgtccttgggcgaaggcctt |
951 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40123399 |
caccaaagacaagaagtataggtcgaccaatcttgtcatgtccttgggcgaaggcctt |
40123342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 171; E-Value: 3e-91
Query Start/End: Original strand, 238 - 496
Target Start/End: Complemental strand, 40119396 - 40119129
Alignment:
| Q |
238 |
ctataacgatatacctgcaaaatggagagagcaccaatgtatccacgcaaatcactatttgagtaaccccatcccttgagttctgctataccaacaaatt |
337 |
Q |
| |
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||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40119396 |
ctataacaatatacctgcaaaatggagagggcaccaatgtatccacgcacatcactatttgagtaaccccatcccttgagttctgctataccaacgaatt |
40119297 |
T |
|
| Q |
338 |
tttcttccccagggggcatgctgatacatcaaatga-------tatgttactaatcaatattctaaccaatttcacagttttattgtactggaataagga |
430 |
Q |
| |
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| |||| |||| |||||||||||||||||||||| |||||||||||| |||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
40119296 |
tctcttgtccagctggcatgctgatacatcaaatgatatgatatatgttactaattaatattctaaccgatttaacagttttattgtactggaataagga |
40119197 |
T |
|
| Q |
431 |
attaattaccttgcacatagtttatcaagaatataaactgcaaaccctg--tatcacaaagaaaattg |
496 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||| ||||||| |
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| T |
40119196 |
attaattaccttgcacatagtttatcaagaatataaactacaaaacctgtatatcacaaacaaaattg |
40119129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 28 - 166
Target Start/End: Complemental strand, 40119605 - 40119467
Alignment:
| Q |
28 |
tttaaaaaatcaccttcttcttagttttgttgtcaatgaacgggtaaactattttccacactttcataaaaatgtacggtgcatggagaataaacaactt |
127 |
Q |
| |
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||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||| |||||||| |
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| T |
40119605 |
tttaaaacgtcaccttcttcttggttttgttgtcaatgaacgggtaaattattttccacactttcataaaaatgtatggtgcgtggagaattaacaactt |
40119506 |
T |
|
| Q |
128 |
ccccaatctttcagggtagtaatcctgcatccaagaaat |
166 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
40119505 |
tcccaatctttcagggtagtaatcctgcatccaagaaat |
40119467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 846 - 951
Target Start/End: Complemental strand, 40119074 - 40118969
Alignment:
| Q |
846 |
acatacgtttgaattcatctagaccatctttcttttgaaaatgtcttccaccaaagacaagaagtataggtcgaccaatcttgtcatgtccttgggcgaa |
945 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||| ||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
40119074 |
acatacgtttgaattcatctagaccatctttcttttgataatgttttccaccgaaggcaataagtataggtcgaccaatcttgtcccgtccttgggcgaa |
40118975 |
T |
|
| Q |
946 |
ggcctt |
951 |
Q |
| |
|
|||||| |
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|
| T |
40118974 |
ggcctt |
40118969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 151
Target Start/End: Complemental strand, 44989187 - 44989075
Alignment:
| Q |
39 |
accttcttcttagttttgttgtcaatgaacgggtaaactattttccacactttcataaaaatgtacggtgcatggagaataaacaacttccccaatcttt |
138 |
Q |
| |
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||||||||||| || |||| |||||||| ||||||| |||||||| ||||||||||| ||||| |||||||| | || |||||||| |||||||| | |
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| T |
44989187 |
accttcttcttggtattgtcatcaatgaaagggtaaataattttccatactttcataaacatgtaaggtgcatgtactatgaacaactttcccaatctct |
44989088 |
T |
|
| Q |
139 |
cagggtagtaatc |
151 |
Q |
| |
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| || |||||||| |
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| T |
44989087 |
ctggatagtaatc |
44989075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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