View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8965_low_11 (Length: 431)
Name: NF8965_low_11
Description: NF8965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8965_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 23434168 - 23434578
Alignment:
| Q |
1 |
aataaagaaaataaactggaacgtgaatgtgtggagaaaatgtcattgagggagatgaagattaagggatagagtgtgactcaatttgtagtgactaatt |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23434168 |
aataaagaaaataaacaggaacgtgaatgtgtggagaaaatgccattgagggagatgaagattaagggatagagtgtgactcaatttgtagtgactaatt |
23434267 |
T |
|
| Q |
101 |
aaatgctaaccgttgatgtgtatctgaaggttattaatgattcctctcatctctcacattaacttcttcactcatttgatatattctctacgtgtgtgtg |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
23434268 |
aaatgctaaccgttgatgtgtatctgatggttattaatgattcctctcatctctcacattaacttcttcactcatttgatatattctctacgtgt--gtg |
23434365 |
T |
|
| Q |
201 |
tatctatatatcttactattttattttgacaaaatttgtgacaatattactgcatatgtgttccacgaatttctattattggcatgaccatatattagtg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23434366 |
tatctatatatcttactattttattttgacaaaatttgtgacaatgttactgcatatgtgttccacgaatttctattattggcatgaccatatattagtg |
23434465 |
T |
|
| Q |
301 |
tatgatgattggttttgaatagtgaacgaaagagggaggcacccaagcctacccactccctgcatctgcccctaaggtgatgtgaaggatgtgtgtggat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
23434466 |
tatgatgattggttttgaatagtgaacgaaagagggaggcacccaagcctaccccctccctgcatctgcccctaaggtgatgtgaaggatgtatgtggat |
23434565 |
T |
|
| Q |
401 |
gttatggcctaaa |
413 |
Q |
| |
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||||||||||||| |
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| T |
23434566 |
gttatggcctaaa |
23434578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 31 - 158
Target Start/End: Original strand, 19638754 - 19638882
Alignment:
| Q |
31 |
gtggagaaaatgtcattgagggagatgaagattaagggatagagtgtgactcaatttgtagtgactaattaaatgctaaccgttgatgtgtatctgaagg |
130 |
Q |
| |
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|||||||| |||||| ||||||||||||||| ||||||| ||||||||| | | |||||||||||| ||||||| |||||||||| | |||||| || |
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| T |
19638754 |
gtggagaatatgtcaggaagggagatgaagattgagggatacagtgtgactaagtctgtagtgactaactaaatgccaaccgttgatatagatctgatgg |
19638853 |
T |
|
| Q |
131 |
ttattaatgattcctctca-tctctcaca |
158 |
Q |
| |
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|||||||| |||||||||| ||||||||| |
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| T |
19638854 |
ttattaattattcctctcactctctcaca |
19638882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 274 - 395
Target Start/End: Complemental strand, 23444645 - 23444519
Alignment:
| Q |
274 |
tattattggcatgaccatatattagtgtatgatgattggttttgaatagtgaacgaaagagggaggcacccaagcctaccca-----ctccctgcatctg |
368 |
Q |
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||||||||| |||||||||||||| | | |||||||||||||||||||||||| |||||||||||| ||||| | | || |||||||||| | |
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| T |
23444645 |
tattattggtatgaccatatattaatatgtgatgattggttttgaatagtgaatgaaagagggagggggccaagtccatgcatgtttgtccctgcatccg |
23444546 |
T |
|
| Q |
369 |
cccctaaggtgatgtgaaggatgtgtg |
395 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
23444545 |
tccctaaggtgatgtgaaggatgtgtg |
23444519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 31 - 190
Target Start/End: Original strand, 14099137 - 14099297
Alignment:
| Q |
31 |
gtggagaaaatgtcattgagggagatgaagattaagggatagagtgtgactcaatttgtagtgactaattaaatgctaaccgttgatgtgtatctgaagg |
130 |
Q |
| |
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|||||||| |||||| ||||||||||||||| ||||||| ||||||||| | | |||||||||||| ||||||| |||||||||| | ||| || || |
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| T |
14099137 |
gtggagaatatgtcaggaagggagatgaagattgagggatacagtgtgactaagtctgtagtgactaactaaatgccaaccgttgatatagatcagatgg |
14099236 |
T |
|
| Q |
131 |
ttattaatgattcctctca-tctctcacattaacttcttcactcatttgatatattctcta |
190 |
Q |
| |
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|||||||| |||||||||| ||||||||| ||| | || | |||| ||||||| ||||||| |
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|
| T |
14099237 |
ttattaattattcctctcactctctcacaataaatactcctctcacttgatatgttctcta |
14099297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 31 - 148
Target Start/End: Original strand, 20509267 - 20509384
Alignment:
| Q |
31 |
gtggagaaaatgtcattgagggagatgaagattaagggatagagtgtgactcaatttgtagtgactaattaaatgctaaccgttgatgtgtatctgaagg |
130 |
Q |
| |
|
|||||||| |||||| ||||||||||||||| ||||||| ||||||||| | | |||||||||||| ||||||| |||||||||| | |||||| || |
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| T |
20509267 |
gtggagaatatgtcaggaagggagatgaagattgagggatacagtgtgactaagtctgtagtgactaactaaatgccaaccgttgatatagatctgatgg |
20509366 |
T |
|
| Q |
131 |
ttattaatgattcctctc |
148 |
Q |
| |
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|||||||| ||||||||| |
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| T |
20509367 |
ttattaattattcctctc |
20509384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 148
Target Start/End: Original strand, 30785527 - 30785644
Alignment:
| Q |
31 |
gtggagaaaatgtcattgagggagatgaagattaagggatagagtgtgactcaatttgtagtgactaattaaatgctaaccgttgatgtgtatctgaagg |
130 |
Q |
| |
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|||||||| |||||| ||||||||||||||| ||||||| ||||||||| | | |||||||||||| |||||| |||||||||| | |||||| || |
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| T |
30785527 |
gtggagaatatgtcaggaagggagatgaagattgagggatatagtgtgactaagtctgtagtgactaactaaatgtcaaccgttgatatagatctgatgg |
30785626 |
T |
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| Q |
131 |
ttattaatgattcctctc |
148 |
Q |
| |
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|||||||| ||||||||| |
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| T |
30785627 |
ttattaattattcctctc |
30785644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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