View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8965_low_15 (Length: 400)
Name: NF8965_low_15
Description: NF8965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8965_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 6 - 380
Target Start/End: Complemental strand, 5192714 - 5192339
Alignment:
| Q |
6 |
tttggtgttaatgtttgtctttgaggatattatcttgttttagacctttatat--gtctttgtcattcttttgagttttgaaatcaaagccattgaatcc |
103 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5192714 |
tttgttgttaatgtttgtctttgagg-tattatcttgttttagacctttatatatgtctttgtcattcttttgagttttgaaatcaaagccattgaatcc |
5192616 |
T |
|
| Q |
104 |
ctaatatccatacctacattttttatgaagacatctatatataaccttgacgttaacttatatgattctacgcgatctcgttgtggtgtgacgagcttgc |
203 |
Q |
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|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||| |
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| T |
5192615 |
ctaaaatccatacctacattttttatgaagacatctatacataaccttgacgttaacttgtgtgattctaggcgatctcgttgtggtgtgacgagcttgc |
5192516 |
T |
|
| Q |
204 |
ctaggtatattttttctagcttacgcatgagacacaacgactggcctatgcaacccattgtagaacatgagaatatttaaagattttcatatcaaatttt |
303 |
Q |
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||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5192515 |
ctaggtatattttttttagattacgcatgagacacaacgactggcctatgcaacccattgtagaacatgagaatatttaaagattttcatatcaaatttt |
5192416 |
T |
|
| Q |
304 |
atccattctcctcaaacctttgcacaaaaattagaggcaaaccctaacattcattcttctattgatttttgattgat |
380 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5192415 |
atccattctcttcaaacctttgcacaaaaattagaggcaaaccctaacattcattcttctattgatttttgattgat |
5192339 |
T |
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