View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8965_low_17 (Length: 356)
Name: NF8965_low_17
Description: NF8965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8965_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 38 - 338
Target Start/End: Complemental strand, 45580697 - 45580382
Alignment:
| Q |
38 |
tggtggttgtgaccaatggttgtcggaactgagactcatctctctcaagcagcagtggatgtagagagatacggtggtggagaggacggtgatgagagtg |
137 |
Q |
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| T |
45580697 |
tggtggttgtgaccaatggttgtcggaactgagactcatctctctcaagcagcagtggatgtagagagatacggtggtggagaggacggtgatgagagtg |
45580598 |
T |
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| Q |
138 |
gtcttggtgggtagagatgaatctgagaaggttgatatggt------ggtgctataaacatagattagagacgatcttgtggtggtgacaggagaata-- |
229 |
Q |
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| T |
45580597 |
gtgttggtgggtagagatgaatctgagaaggttgatatggtggtggtggtgctgtagacatagattagagacgatcttgtggtggtgataggagaatagc |
45580498 |
T |
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| Q |
230 |
-------gtggtggtggtgaacaagatcggagatgaaggttgaggtggtgtggtgatgtaatatcctgcattttttaaaaagaaatggatgaaaaagatg |
322 |
Q |
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| T |
45580497 |
ggtggtggtggtggtggtgaacaagatcggagatgaaggttgaggtggtgtggtgatgtaatattctgcattttttaaaaagaaatggatgaaaaagatg |
45580398 |
T |
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| Q |
323 |
aaggatttaggtgaag |
338 |
Q |
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| T |
45580397 |
aaggaattaggtgaag |
45580382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 21 - 230
Target Start/End: Original strand, 37022617 - 37022833
Alignment:
| Q |
21 |
gagagtatcacaggtggtggtggttgtgaccaatggttgtcggaactgagactcatctctctcaagcagcagtggatgtagagagatacggtggtggaga |
120 |
Q |
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| T |
37022617 |
gagagtatcacaggtggtggtggttgtgaccaatggttgtcagaactgagactcatctctctcaagcagtagtggatgtagagagatacggtggtggaga |
37022716 |
T |
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| Q |
121 |
ggacggtgatgagagtggtcttggtgggt-agagatgaatctgagaaggttgata------tggtggtgctataaacatagattagagacgatcttgtgg |
213 |
Q |
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| T |
37022717 |
ggacggtgatgagagtggttttggtgggtgagagatgaatctgagaaggttggtatggtggtggtggtgctgtaaacatagattagagacgatcttgtgg |
37022816 |
T |
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| Q |
214 |
tggtgacaggagaatag |
230 |
Q |
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| T |
37022817 |
tggtgataggagaatag |
37022833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 234 - 338
Target Start/End: Original strand, 37023491 - 37023594
Alignment:
| Q |
234 |
tggtggtgaacaagatcggagatgaaggttgaggtggtgtggtgatgtaatatcctgcattttttaaaaagaaatggatgaaaaagatgaaggatttagg |
333 |
Q |
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| T |
37023491 |
tggtggtgaacaagatcggagatgaaggttgaggtggtgtggtgatgtaatattctgcattttttaaaaagaaatggatgaaaaagatgaa-gaattagg |
37023589 |
T |
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| Q |
334 |
tgaag |
338 |
Q |
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| T |
37023590 |
tgaag |
37023594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 21 - 241
Target Start/End: Complemental strand, 35562793 - 35562566
Alignment:
| Q |
21 |
gagagtatcacaggtggtggtggttgtgaccaatggttgtcggaactgagactcatctctctcaagcagcagtggatgtagagagatacggtggtggaga |
120 |
Q |
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| T |
35562793 |
gagagtatcacaggtggtggtggttgtgaccaatggttgtcagaactgagactcatctctctcaagcagcagtggatgtagagagatacggtggtggaga |
35562694 |
T |
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| Q |
121 |
ggacggtgatgagagtggtcttggtgggt-agagatgaatctgagaaggttgat------atggtggtgctataaacatagattagagacgatcttgtgg |
213 |
Q |
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| T |
35562693 |
ggacggtgatgagagtggtcttggtgggtgagagatgaatctgagaaggttgatatggtgatggtggtgttgtaaacatagattagagacgatcttgtgg |
35562594 |
T |
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| Q |
214 |
tggtgacaggagaatagtggtggtggtg |
241 |
Q |
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| T |
35562593 |
tggtgataggagaatagcggtggtggtg |
35562566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 175 - 338
Target Start/End: Complemental strand, 14054560 - 14054393
Alignment:
| Q |
175 |
tggtggtgctataaacatagattagagacgatcttgtggtggtgacaggagaatag---tggtggtggtgaacaagatcggagatgaaggttgaggtggt |
271 |
Q |
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| T |
14054560 |
tggtggtgttgtaaacatagattagagacgatcttgtggtggtgataggagaatagcggtggtggtggtgaacaatatcggagatgaaggttgaggtggt |
14054461 |
T |
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| Q |
272 |
gtggtgatgtaatatcctgcatt-ttttaaaaagaaatggatgaaaaagatgaaggatttaggtgaag |
338 |
Q |
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| T |
14054460 |
gttgtgatgtaatattctgcatttttttaaaaagaaatggatgaaaaagatgaaggaattaggtgaag |
14054393 |
T |
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