View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8965_low_2 (Length: 850)
Name: NF8965_low_2
Description: NF8965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8965_low_2 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 268 - 633
Target Start/End: Original strand, 2990659 - 2991024
Alignment:
| Q |
268 |
gttagaaacatttgggctactatgttcacaagtgatccacaaataattgcgttaacatcaatggtgttaccgattataggactatgtgagcttggaaatt |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2990659 |
gttagaaacatttgggctactatgttcacaagtgatccacaaataattgcgttaacatcaatggtgttaccgattataggactatgtgagcttggaaatt |
2990758 |
T |
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| Q |
368 |
gtccacaaacaactgtttgtggtgttttgaggggaacggcgaggccgaaattaggcgcaaatataaatttaggttgtttttatcttgtgggaatgcctgt |
467 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2990759 |
gtccacaaacaactgtttgtggtgttttgaggggaacggcgaggccgaaattaggcgcaaatataaatttaggttgtttttatcttgtgggaatgcctgt |
2990858 |
T |
|
| Q |
468 |
tgcagtttggttgagtttctttgctggatttgatttcaaaggtttgtggtttggtcttatggctgctcaaggttcatgtatgattacaatgttgtttgtt |
567 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2990859 |
tgcagtttggttgagtttctttgctggatttgatttcaaaggtttgtggtttggtcttatggctgctcaaggttcatgtatgattacaatgttgtttgtt |
2990958 |
T |
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| Q |
568 |
ttggttcgtacaaattgggaaaatcaagcagaaagagctaaggagttaacatcatcagattcaagt |
633 |
Q |
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| T |
2990959 |
ttggttcgtacaaattgggaaaatcaagcagaaagagctaaggagttaacatcatcagattcaagt |
2991024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 13 - 220
Target Start/End: Original strand, 2990404 - 2990611
Alignment:
| Q |
13 |
tggtggtggtacgaaatcatgattttgctttgtggattattgcttaatccacatgcaactgttgcatctatgggtgtgttgattcaaaccactgcattga |
112 |
Q |
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| T |
2990404 |
tggtggtggtacgaaatcatgattttgctttgtggattattgcttaatccacatgcaactgttgcatctatgggtgtgttgattcaaaccactgcattga |
2990503 |
T |
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| Q |
113 |
tatacatttttccttcttctttgagttttggtgtttcaacaagagttggaaatgaacttggtgctgaaaatccacaaaaagcaaaacttgcagcaatagt |
212 |
Q |
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| T |
2990504 |
tatacatttttccttcttctttgagttttggtgtttcaacaagagttggaaatgaacttggtgctgaaaatccacaaaaagcaaaacttgcagcaatagt |
2990603 |
T |
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| Q |
213 |
aggactct |
220 |
Q |
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|||||||| |
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| T |
2990604 |
aggactct |
2990611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 662 - 833
Target Start/End: Original strand, 2991053 - 2991226
Alignment:
| Q |
662 |
tgattgtcaattcaagttcatgtggcacaaaagagtgctctgattcattggtttgaannnnnnnnnnnnnnn--aatattttacaagatttaaatggtga |
759 |
Q |
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| T |
2991053 |
tgattgtcaattcaagttcatgtggcacaaaagagtgctctgattcattagtttgaattttttatttattttttaatattttacaagatttaaatggtga |
2991152 |
T |
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| Q |
760 |
acaaattcattctttctagatttttgtactaatttttatattgtaaactaattaagagaagttaatgaggataa |
833 |
Q |
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| T |
2991153 |
acaaattcattctttctagatttttgtactaatttttatattgtaaactaattaagagaagttaatgaggataa |
2991226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 318 - 392
Target Start/End: Complemental strand, 28505530 - 28505456
Alignment:
| Q |
318 |
gttaacatcaatggtgttaccgattataggactatgtgagcttggaaattgtccacaaacaactgtttgtggtgt |
392 |
Q |
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| T |
28505530 |
gttaacatctattgtgttaccaattgttggactttgcgagctcggaaattgtccccaaacaaccggttgtggtgt |
28505456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 13 - 219
Target Start/End: Complemental strand, 45845849 - 45845643
Alignment:
| Q |
13 |
tggtggtggtacgaaatcatgattttgctttgtggattattgcttaatccacatgcaactgttgcatctatgggtgtgttgattcaaaccactgcattga |
112 |
Q |
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||||||||||| ||||||||||||||| | ||||| || ||| | |||||| ||||| ||||| |||||||| | ||||||||||| ||| | ||| |
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| T |
45845849 |
tggtggtggtatgaaatcatgattttgttatgtggtttgttgataaatccaagagcaaccgttgcttctatgggaattttgattcaaactacttctttgc |
45845750 |
T |
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| Q |
113 |
tatacatttttccttcttctttgagttttggtgtttcaacaagagttggaaatgaacttggtgctgaaaatccacaaaaagcaaaacttgcagcaatagt |
212 |
Q |
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| T |
45845749 |
tatatatttttccatcatcaataagttttagtgtttccactagagttggtaacaaacttggtgctcaaaagccatcaaaagcaaaactttcagcaattgt |
45845650 |
T |
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| Q |
213 |
aggactc |
219 |
Q |
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| T |
45845649 |
aggactc |
45845643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 343 - 521
Target Start/End: Complemental strand, 45845519 - 45845341
Alignment:
| Q |
343 |
ataggactatgtgagcttggaaattgtccacaaacaactgtttgtggtgttttgaggggaacggcgaggccgaaattaggcgcaaatataaatttaggtt |
442 |
Q |
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| T |
45845519 |
atagggctatgtgaacttggaaattgtccacaaacaacaggttgtggggtgttaagaggaacagcaaggcctaaagtaggtgcaaatatcaattttggtt |
45845420 |
T |
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| Q |
443 |
gtttttatcttgtgggaatgcctgttgcagtttggttgagtttctttgctggatttgatttcaaaggtttgtggtttgg |
521 |
Q |
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| T |
45845419 |
gtttttacattgttggaatgccagtggcaatttggttagctttttatgttgggtttgattttcaaggtttgtggattgg |
45845341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 271 - 479
Target Start/End: Original strand, 24526 - 24734
Alignment:
| Q |
271 |
agaaacatttgggctactatgttcacaagtgatccacaaataattgcgttaacatcaatggtgttaccgattataggactatgtgagcttggaaattgtc |
370 |
Q |
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|||||||| ||||||| ||||||||||| || | |||| ||||| |||||||||||||| || || |||||||| ||||||| || || || |||| |
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| T |
24526 |
agaaacatgtgggctagtatgttcacaaaagacaaagaaatcattgctttaacatcaatggttttgccaattataggtttatgtgaactaggtaactgtc |
24625 |
T |
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| Q |
371 |
cacaaacaactgtttgtggtgttttgaggggaacggcgaggccgaaattaggcgcaaatataaatttaggttgtttttatcttgtgggaatgcctgttgc |
470 |
Q |
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| T |
24626 |
ctcaaacaacaggctgtggtgttcttagaggaacagcaaggcctaaagttggtgctaatatcaacttaggttgtttttatctcgtcggaatgccggtttc |
24725 |
T |
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| Q |
471 |
agtttggtt |
479 |
Q |
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|||||||| |
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| T |
24726 |
ggtttggtt |
24734 |
T |
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