View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8965_low_5 (Length: 589)
Name: NF8965_low_5
Description: NF8965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8965_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 1 - 567
Target Start/End: Original strand, 46574391 - 46574954
Alignment:
| Q |
1 |
gcaaatagttatattctacttcaacattcattctaaattttgttcttgctacaagagaatttggtgaaatatatctaataatacaaaacatttccttgag |
100 |
Q |
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| T |
46574391 |
gcaaatagttatattcttcttcaacattcattcgaaattttgttcttgctacaagagaatttggtgaaatatatctaataatacaaaacatttcctttag |
46574490 |
T |
|
| Q |
101 |
tgtgaaacatatccggttcaaaaaatagcactaacatatagcttgaagcttcacattcgaacctatgtcatagttataaactgcgaatacacccgagcac |
200 |
Q |
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| T |
46574491 |
tgtgaaacatatccggttcaaaaaatagcactaacatatagcttgaagcttcacattcgaacctatgtcatagttataaactgcgaatacacccgagcac |
46574590 |
T |
|
| Q |
201 |
actaccaagcacatatcctgcaagtcccatcttcattaacttaaacaaaatgataaaggccatttccaccacattagcatgtaaatctctaaggtgaact |
300 |
Q |
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| T |
46574591 |
actaccaagcacatatcctgcaagtcccatcttcattaacttaaacaaaatgataaatgccatttccaccacattagcatgtaaatctctaaggtgaact |
46574690 |
T |
|
| Q |
301 |
gttctaaatatagtagacctaaaccggtagctggaagcaacatatcttgtcgataaactttgatccattgcttcctccacccatttgctttttggatcat |
400 |
Q |
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| T |
46574691 |
gttctaaatatagtagacctaaaccggtagctggaagccacatatcttgttcataaactttgatccattgcttcccccacccatgcgcttttcggatcat |
46574790 |
T |
|
| Q |
401 |
agtttgtagcagtaaaataaagaagacatccaccca-aatgcacataggatagaacaatctgtaaaaatggttcaaattattaattgatgcatgatgcat |
499 |
Q |
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| T |
46574791 |
agtttgtagcagtaaaataaagaagacatccacccacaatgcacaatggatagaagaatatgtaaaaatggttcaaattattagttg----atgatacat |
46574886 |
T |
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| Q |
500 |
acatatttatcttctttgttaaaatgttaaaattataattaatatatatgttgaaaaccttaccaaga |
567 |
Q |
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| T |
46574887 |
acatatttatcttctttgttaaaatgttaaaatcataattaatatatatgttcaaaaccttaccaaga |
46574954 |
T |
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