View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8965_low_6 (Length: 548)

Name: NF8965_low_6
Description: NF8965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8965_low_6
NF8965_low_6
[»] chr3 (28 HSPs)
chr3 (16-511)||(46553953-46554462)
chr3 (228-511)||(46531769-46532049)
chr3 (261-448)||(46483961-46484145)
chr3 (248-454)||(46538892-46539107)
chr3 (232-509)||(46479642-46479916)
chr3 (232-511)||(45883734-45884010)
chr3 (261-503)||(46473787-46474026)
chr3 (320-454)||(46544364-46544498)
chr3 (322-439)||(45902876-45902993)
chr3 (383-510)||(16025332-16025459)
chr3 (237-448)||(51943803-51944011)
chr3 (367-511)||(5160125-5160268)
chr3 (383-502)||(46490568-46490687)
chr3 (327-437)||(46549078-46549188)
chr3 (322-447)||(46526511-46526635)
chr3 (367-509)||(5156097-5156239)
chr3 (87-147)||(46236634-46236694)
chr3 (26-157)||(46532134-46532265)
chr3 (74-162)||(45883560-45883648)
chr3 (87-159)||(47397148-47397220)
chr3 (75-158)||(46539211-46539294)
chr3 (322-404)||(4613925-4614007)
chr3 (77-158)||(5160488-5160569)
chr3 (248-305)||(46544525-46544582)
chr3 (430-510)||(47414380-47414460)
chr3 (87-162)||(16025694-16025769)
chr3 (75-127)||(5156490-5156542)
chr3 (232-304)||(46236796-46236868)
[»] chr7 (6 HSPs)
chr7 (232-509)||(17735779-17736053)
chr7 (244-509)||(17708125-17708387)
chr7 (244-503)||(17717955-17718211)
chr7 (232-503)||(17744966-17745233)
chr7 (232-509)||(16722002-16722276)
chr7 (232-509)||(17699016-17699290)
[»] chr4 (5 HSPs)
chr4 (232-439)||(35162361-35162564)
chr4 (397-511)||(15555862-15555976)
chr4 (232-446)||(35155333-35155544)
chr4 (78-141)||(35162669-35162732)
chr4 (76-158)||(35155632-35155714)
[»] chr8 (5 HSPs)
chr8 (327-446)||(21464281-21464400)
chr8 (76-162)||(9675525-9675611)
chr8 (76-162)||(9692547-9692633)
chr8 (76-162)||(21464019-21464105)
chr8 (231-299)||(21464188-21464256)


Alignment Details
Target: chr3 (Bit Score: 423; Significance: 0; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 16 - 511
Target Start/End: Original strand, 46553953 - 46554462
Alignment:
Q  16 ctgtgcccacttcatttactttaatgatagacttttgagttatattggaaatccataatggagagtctactatttttgttaaacctccatcagagaaagg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  46553953 ctgtgcccacttcatttactttaatgatagacttttgagttatattggaaatccataatggagagtctactatttttgttaaacctccattagagaaagg 46554052  T
Q  116 taaaatcactcccaactccttcagcatattagaaagttcaagcccaa--------------cttggaatcctaaagtcacccacatcaactatactatca 201  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||              |||||||||||||||||||||||||||||||||||||||    
T  46554053 taaaatcactcccaactccttcagcatattagaaagttcaaacccaaaagaaatttcgaaacttggaatcctaaagtcacccacatcaactatactatca 46554152  T
Q  202 ggaagtatgtgttccagggtctcatatttggaagccactttctcaatcaaagctgacaacccatcttttgcaacgggaagtaaaaagtacatagagaaat 301  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  46554153 ggaagtatgtgttccagggtctcatattccgaagccactttctcaatcaaagctgacaacccatcttttgcatcgggaagtaaaaagtacatagagaaat 46554252  T
Q  302 gacggtcatctatagtaccatgctcataaggaagaccaaggaccttaaaaccatcaaaaacactgataaactgactctccctgctagtcatgaagggaac 401  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  46554253 gacggtcatctatagtaccatgctcataaggaagacgaaggaccttaaaaccatcaaaaacactgataaactgactctccctgctggtcttgaagggaac 46554352  T
Q  402 cttgaatgagctaccatctagaaggtgaaaatcatagtcttttgtttctgaagcgtcaaacggttgatgccatgcacctttaaagtatagtgcattagca 501  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  46554353 cttgaatgagctaccatcaagaaggtgaaaatcatagtcttttgtttctgaagcgtcaaacggttgatgccatgcacctttaaaatatagtgcattagca 46554452  T
Q  502 aaaatgagtc 511  Q
    ||||||||||    
T  46554453 aaaatgagtc 46554462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 228 - 511
Target Start/End: Complemental strand, 46532049 - 46531769
Alignment:
Q  228 tttggaagccactttctcaatcaaagctgacaacccatcttttgcaacgggaagtaaaaagtacatagagaaatgacggtcatctatagtaccatgctca 327  Q
    |||||||||||||||||||||||||||| |||| ||||||| |||| ||||||| ||||||||||||||||| |||||   |||  |    || |||| |    
T  46532049 tttggaagccactttctcaatcaaagctaacaatccatcttgtgcatcgggaagaaaaaagtacatagagaattgacgaatatcgttg---ccttgctta 46531953  T
Q  328 taaggaagaccaaggaccttaaaaccatcaaaaacactgataaactgactctccctgctagtcatgaagggaaccttgaatgagctaccatctagaaggt 427  Q
    |||||||||| ||||| |||||||||||||||| || | ||||||||  ||| | |||||||||||||||||||||| | |||||| ||| | |||||||    
T  46531952 taaggaagacgaaggatcttaaaaccatcaaaagcatttataaactgcttcttcttgctagtcatgaagggaaccttaattgagctgccaccgagaaggt 46531853  T
Q  428 gaaaatcatagtcttttgtttctgaagcgtcaaacggttgatgccatgcacctttaaagtatagtgcattagcaaaaatgagtc 511  Q
    ||||||||| ||||||||||| |||||| ||||| |||||||||||||| || |||||||| ||||||||||||||||||||||    
T  46531852 gaaaatcatggtcttttgtttttgaagcatcaaatggttgatgccatgctccattaaagtagagtgcattagcaaaaatgagtc 46531769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 261 - 448
Target Start/End: Complemental strand, 46484145 - 46483961
Alignment:
Q  261 cccatcttttgcaacgggaagtaaaaagtacatagagaaatgacggtcatctatagtaccatgctcataaggaagaccaaggaccttaaaaccatcaaaa 360  Q
    |||||||||||||   ||||| ||||||||||||| |||| |||| | |||| | |  || |||| ||||||||||||||| || |||||||||||||||    
T  46484145 cccatcttttgcatttggaagaaaaaagtacatagtgaaacgacgcttatct-tcg--ccttgcttataaggaagaccaagaactttaaaaccatcaaaa 46484049  T
Q  361 acactgataaactgactctccctgctagtcatgaagggaaccttgaatgagctaccatctagaaggtgaaaatcatagtcttttgttt 448  Q
     | || ||||||||  ||| | |||||||||| ||||||||||||| |||||| ||||  ||||||||||||||||||||||||||||    
T  46484048 gctctaataaactgcttcttcttgctagtcataaagggaaccttgactgagctgccattgagaaggtgaaaatcatagtcttttgttt 46483961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 248 - 454
Target Start/End: Complemental strand, 46539107 - 46538892
Alignment:
Q  248 tcaaagctgacaacccatcttttgcaacgggaagtaaaaagtacatagagaaatgacggtcatctat---------agtaccatgctcataaggaagacc 338  Q
    |||||||| ||||||||||||||||| | ||||| ||||||||||||||||||| ||| | |||  |         || | |||||| ||||  |||||     
T  46539107 tcaaagctaacaacccatcttttgcatcaggaagaaaaaagtacatagagaaataacgcttatcactttgcctaaaagcatcatgcttataaaaaagacg 46539008  T
Q  339 aaggaccttaaaaccatcaaaaacactgataaactgactctccctgctagtcatgaagggaaccttgaatgagctaccatctagaaggtgaaaatcatag 438  Q
     ||||| |||||||||||||||||||| ||||  || | ||||| ||| ||||||||||||||||||| |||||| ||||  ||||||| ||||||||||    
T  46539007 gaggactttaaaaccatcaaaaacactaataagttgtcactcccggcttgtcatgaagggaaccttgactgagctgccattaagaaggttaaaatcatag 46538908  T
Q  439 tcttttgtttctgaag 454  Q
    |||||||||| |||||    
T  46538907 tcttttgtttttgaag 46538892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 232 - 509
Target Start/End: Complemental strand, 46479916 - 46479642
Alignment:
Q  232 gaagccactttctcaatcaaagctgacaacccatcttttgcaacgggaagtaaaaagtacatagagaaatgacggtcatctatagtaccatgctcataag 331  Q
    |||||||| || || | |||||||| ||||||||||||||||   ||||| ||||||||||| | ||| ||||| | |||| | |  || |||| |||||    
T  46479916 gaagccaccttttcgaccaaagctgccaacccatcttttgcatttggaagaaaaaagtacatggtgaattgacgcttatct-tcg--ccttgcttataag 46479820  T
Q  332 gaagaccaaggaccttaaaaccatcaaaaacactgataaactgactctccctgctagtcatgaagggaaccttgaatgagctaccatctagaaggtgaaa 431  Q
    ||||||| || || ||||||||||||||| | || ||||||||  ||| | |||| ||||||||||||||||||| || ||||||||  | |||||||||    
T  46479819 gaagaccgagaactttaaaaccatcaaaagctctaataaactgcttcttcttgctggtcatgaagggaaccttgactgggctaccattcaaaaggtgaaa 46479720  T
Q  432 atcatagtcttttgtttctgaagcgtcaaacggttgatgccatgcacctttaaagtatagtgcattagcaaaaatgag 509  Q
     || |||||||  |||| |||||| ||||||   | || ||| || ||||| |||||||||||||| ||||| |||||    
T  46479719 ctcgtagtcttccgtttttgaagcatcaaacttatcattccacgctcctttgaagtatagtgcattggcaaagatgag 46479642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 232 - 511
Target Start/End: Original strand, 45883734 - 45884010
Alignment:
Q  232 gaagccactttctcaatcaaagctgacaacccatcttttgcaacgggaagtaaaaagtacatagagaaatgacggtcatctatagtaccatgctcataag 331  Q
    |||||||| ||||| | |||||||||||  ||||||||||||   ||||| |||||||||||||||||  |||| | ||||  |   || ||||||||||    
T  45883734 gaagccaccttctcgaccaaagctgacagtccatcttttgcatttggaagaaaaaagtacatagagaatcgacgcttatctcca---ccttgctcataag 45883830  T
Q  332 gaagaccaaggaccttaaaaccatcaaaaacactgataaactgactctccctgctagtcatgaagggaaccttgaatgagctaccatctagaaggtgaaa 431  Q
    | | || ||| || ||||||||||||||| | || ||||| |||   | | |||| |||||||||||||| |||| ||| |||||||   |||  |||||    
T  45883831 ggatacaaagcactttaaaaccatcaaaagctctaataaattgatctttcttgctggtcatgaagggaactttgactgaactaccattatgaatatgaaa 45883930  T
Q  432 atcatagtcttttgtttctgaagcgtcaaacggttgatgccatgcacctttaaagtatagtgcattagcaaaaatgagtc 511  Q
    ||| |||| ||||||||  ||||  ||||||||||||| |||||| || |||||||| | |||||||||||| |||||||    
T  45883931 atcgtagtattttgttttcgaaggatcaaacggttgattccatgctcccttaaagtacaatgcattagcaaatatgagtc 45884010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 261 - 503
Target Start/End: Complemental strand, 46474026 - 46473787
Alignment:
Q  261 cccatcttttgcaacgggaagtaaaaagtacatagagaaatgacggtcatctatagtaccatgctcataaggaagaccaaggaccttaaaaccatcaaaa 360  Q
    |||||||||||||   ||||| ||||||||||||| |||| |||| | |||| | |  || |||| ||||||||||||||| || |||||||||||||||    
T  46474026 cccatcttttgcatttggaagaaaaaagtacatagtgaaacgacgcttatct-tcg--ccttgcttataaggaagaccaagaactttaaaaccatcaaaa 46473930  T
Q  361 acactgataaactgactctccctgctagtcatgaagggaaccttgaatgagctaccatctagaaggtgaaaatcatagtcttttgtttctgaagcgtcaa 460  Q
     | || ||||||||  ||| | |||||||||| |||| |||||| | |||||| ||||  ||||||| |||||||||||||||||||  |||||| ||||    
T  46473929 gctctaataaactgcttcttcttgctagtcataaaggaaaccttaactgagctgccattgagaaggtaaaaatcatagtcttttgttgttgaagcatcaa 46473830  T
Q  461 acggttgatgccatgcacctttaaagtatagtgcattagcaaa 503  Q
     |   |||| |||||  |||||||| || | ||||||||||||    
T  46473829 tcttctgattccatgatcctttaaaatacaatgcattagcaaa 46473787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 320 - 454
Target Start/End: Complemental strand, 46544498 - 46544364
Alignment:
Q  320 catgctcataaggaagaccaaggaccttaaaaccatcaaaaacactgataaactgactctccctgctagtcatgaagggaaccttgaatgagctaccatc 419  Q
    |||||| ||||  ||||| |||||| |||||||||||||||||||||||||| || |||| | |||| |||||||| |||||||||| |  ||| ||||     
T  46544498 catgcttataaaaaagacgaaggactttaaaaccatcaaaaacactgataaattgtctcttcatgcttgtcatgaaaggaaccttgacttggctgccatt 46544399  T
Q  420 tagaaggtgaaaatcatagtcttttgtttctgaag 454  Q
     ||||||| |||||||||||||||||||| |||||    
T  46544398 gagaaggttaaaatcatagtcttttgtttttgaag 46544364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 322 - 439
Target Start/End: Complemental strand, 45902993 - 45902876
Alignment:
Q  322 tgctcataaggaagaccaaggaccttaaaaccatcaaaaacactgataaactgactctccctgctagtcatgaagggaaccttgaatgagctaccatcta 421  Q
    |||||||||||||||| ||| || || |||||||| ||||| | ||||||||| |||| |  ||| ||||||||||||||||||| ||||||||||| ||    
T  45902993 tgctcataaggaagacgaagtactttgaaaccatcgaaaacgcggataaactgcctcttctcgctggtcatgaagggaaccttgactgagctaccattta 45902894  T
Q  422 gaaggtgaaaatcatagt 439  Q
    |||||| ||||| |||||    
T  45902893 gaaggtaaaaattatagt 45902876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 383 - 510
Target Start/End: Complemental strand, 16025459 - 16025332
Alignment:
Q  383 tgctagtcatgaagggaaccttgaatgagctaccatctagaaggtgaaaatcatagtcttttgtttctgaagcgtcaaacggttgatgccatgcaccttt 482  Q
    |||| |||||||||||||| |||| |  | | ||||  |||| |||||||||||||||||||||||| ||||| |||||| |||||| |||  | |||||    
T  16025459 tgctggtcatgaagggaactttgattacgttgccattcagaatgtgaaaatcatagtcttttgtttccgaagcatcaaactgttgatcccacaccccttt 16025360  T
Q  483 aaagtatagtgcattagcaaaaatgagt 510  Q
    |||||| |||||||||||||| ||||||    
T  16025359 aaagtaaagtgcattagcaaatatgagt 16025332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 237 - 448
Target Start/End: Complemental strand, 51944011 - 51943803
Alignment:
Q  237 cactttctcaatcaaagctgacaacccatcttttgcaacgggaagtaaaaagtacatagagaaatgacggtcatctatagtaccatgctcataaggaaga 336  Q
    |||||| ||||  ||||||||||||||||||||||||   ||||| ||||| ||||||||||| || || | ||||  |   || | || ||||||||||    
T  51944011 cactttttcaactaaagctgacaacccatcttttgcatttggaagaaaaaaatacatagagaattggcgcttatcttca---cctttcttataaggaaga 51943915  T
Q  337 ccaaggaccttaaaaccatcaaaaacactgataaactgactctccctgctagtcatgaagggaaccttgaatgagctaccatctagaaggtgaaaatcat 436  Q
      ||| || |||||| ||||| ||||    ||||||||  |||   |||| ||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  51943914 tgaagaactttaaaatcatcataaacttcaataaactgcttcttattgctggtcatgaagggaaccttgactgagctaccatttagaaggtgaaaatcat 51943815  T
Q  437 agtcttttgttt 448  Q
    | ||||| ||||    
T  51943814 aatctttagttt 51943803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 367 - 511
Target Start/End: Complemental strand, 5160268 - 5160125
Alignment:
Q  367 ataaactgactctccctgctagtcatgaagggaaccttgaatgagctaccatctagaaggtgaaaatcatagtcttttgtttctgaagcgtcaaacggtt 466  Q
    ||||||||| |||||  ||| ||||||||||||||||||| |||||| ||||  | ||||||||||||||||||||| ||||  ||| | ||||||   |    
T  5160268 ataaactgattctcctcgctggtcatgaagggaaccttgactgagct-ccattcaaaaggtgaaaatcatagtctttcgttttcgaaacatcaaacttat 5160170  T
Q  467 gatgccatgcacctttaaagtatagtgcattagcaaaaatgagtc 511  Q
     |  |||||| ||||||||||| |||||||||||||| |||||||    
T  5160169 cactccatgctcctttaaagtagagtgcattagcaaagatgagtc 5160125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 383 - 502
Target Start/End: Complemental strand, 46490687 - 46490568
Alignment:
Q  383 tgctagtcatgaagggaaccttgaatgagctaccatctagaaggtgaaaatcatagtcttttgtttctgaagcgtcaaacggttgatgccatgcaccttt 482  Q
    |||||||||||||||||||||| | |||||| ||||  | ||||||||||||||||||||| |||| |||||| ||||||   | || |||  | |||||    
T  46490687 tgctagtcatgaagggaaccttaattgagctgccattcaaaaggtgaaaatcatagtctttcgtttttgaagcatcaaacttatcattccacactccttt 46490588  T
Q  483 aaagtatagtgcattagcaa 502  Q
     |||||||||||||||||||    
T  46490587 gaagtatagtgcattagcaa 46490568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 327 - 437
Target Start/End: Original strand, 46549078 - 46549188
Alignment:
Q  327 ataaggaagaccaaggaccttaaaaccatcaaaaacactgataaactgactctccctgctagtcatgaagggaaccttgaatgagctaccatctagaagg 426  Q
    ||||||||||  ||| || || |||||||||||||||||||||||||||   | |||||| || ||||||||||||||||  ||||| ||||  ||||||    
T  46549078 ataaggaagataaagaactttgaaaccatcaaaaacactgataaactgatcattcctgctggttatgaagggaaccttgaccgagctgccattgagaagg 46549177  T
Q  427 tgaaaatcata 437  Q
    |||||||||||    
T  46549178 tgaaaatcata 46549188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 322 - 447
Target Start/End: Original strand, 46526511 - 46526635
Alignment:
Q  322 tgctcataaggaagaccaaggaccttaaaaccatcaaaaacactgataaactgactctccctgctagtcatgaagggaaccttgaatgagctaccatcta 421  Q
    |||| |||||||||||  || || || |||||||| |||||||||||||| || || | |  ||| ||||||||||||||||||| |||||| |||| ||    
T  46526511 tgcttataaggaagacggagtactttgaaaccatcgaaaacactgataaattgtctattctcgctggtcatgaagggaaccttgactgagctgccattta 46526610  T
Q  422 gaaggtgaaaatcatagtcttttgtt 447  Q
     ||||||||||||||||| |||||||    
T  46526611 -aaggtgaaaatcatagttttttgtt 46526635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 367 - 509
Target Start/End: Complemental strand, 5156239 - 5156097
Alignment:
Q  367 ataaactgactctccctgctagtcatgaagggaaccttgaatgagctaccatctagaaggtgaaaatcatagtcttttgtttctgaagcgtcaaacggtt 466  Q
    ||||||||| |||||  ||| |||||||||||||||||||  ||||| ||||  | ||||||||||||||||||||| ||||   || | ||||||   |    
T  5156239 ataaactgattctcctcgctggtcatgaagggaaccttgaccgagctgccattcaaaaggtgaaaatcatagtctttcgttttcaaaacatcaaacttct 5156140  T
Q  467 gatgccatgcacctttaaagtatagtgcattagcaaaaatgag 509  Q
     |  |||||| ||||||||||| |||||||||||||| |||||    
T  5156139 cactccatgctcctttaaagtagagtgcattagcaaagatgag 5156097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 87 - 147
Target Start/End: Original strand, 46236634 - 46236694
Alignment:
Q  87 atttttgttaaacctccatcagagaaaggtaaaatcactcccaactccttcagcatattag 147  Q
    |||||||| ||||||||| |||||||||||||||||||||| |||||||||| | ||||||    
T  46236634 atttttgtaaaacctccagcagagaaaggtaaaatcactcctaactccttcatcgtattag 46236694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 157
Target Start/End: Complemental strand, 46532265 - 46532134
Alignment:
Q  26 ttcatttactttaatgatagacttttgagttatattggaaatccataatggagagtctactatttttgttaaacctccatcagagaaaggtaaaatcact 125  Q
    ||||||||||| ||||| ||| ||||||  ||| || |||| ||| |  ||||||||  | |||||||| ||||||||| |||||||||||||||  |||    
T  46532265 ttcatttacttcaatgaaagaattttgaaatatgttagaaacccaaatcggagagtccgccatttttgtcaaacctccaccagagaaaggtaaaacaact 46532166  T
Q  126 cccaactccttcagcatattagaaagttcaag 157  Q
    || ||||||||   || |||||||||||||||    
T  46532165 cctaactcctttgacacattagaaagttcaag 46532134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 162
Target Start/End: Original strand, 45883560 - 45883648
Alignment:
Q  74 tggagagtctactatttttgttaaacctccatcagagaaaggtaaaatcactcccaactccttcagcatattagaaagttcaagcccaa 162  Q
    |||| |||| || |||||||| |||| ||||  |||||||||| ||| |||||| |||||||||| ||||||||||  |||||||||||    
T  45883560 tggatagtccaccatttttgtcaaacttccacgagagaaaggtgaaaccactcctaactccttcaacatattagaagtttcaagcccaa 45883648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 159
Target Start/End: Original strand, 47397148 - 47397220
Alignment:
Q  87 atttttgttaaacctccatcagagaaaggtaaaatcactcccaactccttcagcatattagaaagttcaagcc 159  Q
    |||||||||||||||||    |||||||||||||||||||| |||||||||| ||||| ||||  ||||||||    
T  47397148 atttttgttaaacctccgagggagaaaggtaaaatcactcctaactccttcaacatatcagaagtttcaagcc 47397220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 75 - 158
Target Start/End: Complemental strand, 46539294 - 46539211
Alignment:
Q  75 ggagagtctactatttttgttaaacctccatcagagaaaggtaaaatcactcccaactccttcagcatattagaaagttcaagc 158  Q
    |||||||| || |||||||| |||||||| | |||||||||||||| || ||| | |||||| ||||||||||||  |||||||    
T  46539294 ggagagtccaccatttttgtcaaacctccttgagagaaaggtaaaaccattcctagctccttaagcatattagaagtttcaagc 46539211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 404
Target Start/End: Original strand, 4613925 - 4614007
Alignment:
Q  322 tgctcataaggaagaccaaggaccttaaaaccatcaaaaacactgataaactgactctccctgctagtcatgaagggaacctt 404  Q
    |||||| ||||||||| ||| | ||||||| |||||||||||| |||||||||   ||| |  ||||||||||||||||||||    
T  4613925 tgctcaaaaggaagacgaagaatcttaaaatcatcaaaaacaccgataaactgctcctcacaactagtcatgaagggaacctt 4614007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 77 - 158
Target Start/End: Complemental strand, 5160569 - 5160488
Alignment:
Q  77 agagtctactatttttgttaaacctccatcagagaaaggtaaaatcactcccaactccttcagcatattagaaagttcaagc 158  Q
    |||||| || |||||||| |||||| ||  || |||||||||| ||||||| |||||||||||||||| ||||  |||||||    
T  5160569 agagtccaccatttttgtcaaaccttcacgagtgaaaggtaaagtcactcctaactccttcagcatatcagaagtttcaagc 5160488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 248 - 305
Target Start/End: Complemental strand, 46544582 - 46544525
Alignment:
Q  248 tcaaagctgacaacccatcttttgcaacgggaagtaaaaagtacatagagaaatgacg 305  Q
    |||||||| ||||||||||||||||| | ||||| |||||||| |||||||||| |||    
T  46544582 tcaaagctaacaacccatcttttgcatcaggaagaaaaaagtaaatagagaaataacg 46544525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 510
Target Start/End: Original strand, 47414380 - 47414460
Alignment:
Q  430 aaatcatagtcttttgtttctgaagcgtcaaacggttgatgccatgcacctttaaagtatagtgcattagcaaaaatgagt 510  Q
    ||||| |||||||||||||| ||||| |||||  |||||| |||  | ||||| ||||| |||||||||||||| ||||||    
T  47414380 aaatcgtagtcttttgtttccgaagcatcaaattgttgattccacacccctttgaagtacagtgcattagcaaagatgagt 47414460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 162
Target Start/End: Complemental strand, 16025769 - 16025694
Alignment:
Q  87 atttttgttaaacctccatcagagaaaggtaaaatcactcccaactccttcagcatattagaaagttcaagcccaa 162  Q
    |||||||| |||||||||  ||||||||||||||  ||||| | |||||||||||||| ||||  ||||| |||||    
T  16025769 atttttgtcaaacctccaggagagaaaggtaaaactactccaagctccttcagcatatcagaagtttcaaacccaa 16025694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 5156542 - 5156490
Alignment:
Q  75 ggagagtctactatttttgttaaacctccatcagagaaaggtaaaatcactcc 127  Q
    |||||||| || |||||||| |||||||||  || ||||||||||||||||||    
T  5156542 ggagagtccaccatttttgtcaaacctccacgagtgaaaggtaaaatcactcc 5156490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 232 - 304
Target Start/End: Original strand, 46236796 - 46236868
Alignment:
Q  232 gaagccactttctcaatcaaagctgacaacccatcttttgcaacgggaagtaaaaagtacatagagaaatgac 304  Q
    |||||||  ||||||| ||| | ||||||||||||||||||| | ||||| ||||  ||||||||||| ||||    
T  46236796 gaagccagcttctcaaccaaggttgacaacccatcttttgcatctggaagaaaaatatacatagagaattgac 46236868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 232 - 509
Target Start/End: Complemental strand, 17736053 - 17735779
Alignment:
Q  232 gaagccactttctcaatcaaagctgacaacccatcttttgcaacgggaagtaaaaagtacatagagaaatgacggtcatctatagtaccatgctcataag 331  Q
    ||||| ||||| ||||||||||||||||||||||||||| |  | ||||| |||||||| ||||||||   ||| | |||   | | || || |  ||||    
T  17736053 gaagctactttatcaatcaaagctgacaacccatctttttcgtcaggaagaaaaaagtaaatagagaatgcacgcttatc---attgccttgtttgtaag 17735957  T
Q  332 gaagaccaaggaccttaaaaccatcaaaaacactgataaactgactctccctgctagtcatgaagggaaccttgaatgagctaccatctagaaggtgaaa 431  Q
    ||||||||||||| |||||||||||||||  ||||||||||||| | | | |||| ||||| ||||||||||| | |||  | ||||  ||||||| |||    
T  17735956 gaagaccaaggactttaaaaccatcaaaagaactgataaactgattattcttgctggtcataaagggaacctttactgacttgccattgagaaggtcaaa 17735857  T
Q  432 atcatagtcttttgtttctgaagcgtcaaacggttgatgccatgcacctttaaagtatagtgcattagcaaaaatgag 509  Q
    ||||||||| || |||| |||||  ||||||||| | | |||  | ||||| |||||||||||||| ||||| |||||    
T  17735856 atcatagtccttcgtttttgaagtatcaaacggtcgtttccaaactcctttgaagtatagtgcattcgcaaagatgag 17735779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 244 - 509
Target Start/End: Complemental strand, 17708387 - 17708125
Alignment:
Q  244 tcaatcaaagctgacaacccatcttttgcaacgggaagtaaaaagtacatagagaaatgacggtcatctatagtaccatgctcataaggaagaccaagga 343  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||| || |||||   |||  |||    | | || || |  |||||||||||||| |    
T  17708387 tcaatcaaagctgacaacccatcttttgcatcgggaagaaaaaagtaaatggagaatgcacgcccata---attgccttgtttgtaaggaagaccaagaa 17708291  T
Q  344 ccttaaaaccatcaaaaacactgataaactgactctccctgctagtcatgaagggaaccttgaatgagctaccatctagaaggtgaaaatcatagtcttt 443  Q
    | |||||||||||||||  |||||||||||||   | | |||| ||||| ||||||||||| | |||  | ||||  ||||||| |||||||||||| ||    
T  17708290 ctttaaaaccatcaaaagaactgataaactgatcattcttgctggtcataaagggaacctttactgacttgccattgagaaggtcaaaatcatagtcctt 17708191  T
Q  444 tgtttctgaagcgtcaaacggttgatgccatgcacctttaaagtatagtgcattagcaaaaatgag 509  Q
     |||| |||||  ||||||||| | |||||  | ||||| || ||||||||||||||||| |||||    
T  17708190 cgtttttgaagtatcaaacggtcgttgccaaactcctttgaaatatagtgcattagcaaatatgag 17708125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 244 - 503
Target Start/End: Complemental strand, 17718211 - 17717955
Alignment:
Q  244 tcaatcaaagctgacaacccatcttttgcaacgggaagtaaaaagtacatagagaaatgacggtcatctatagtaccatgctcataaggaagaccaagga 343  Q
    ||||||||||| |||||||||||||||||| ||||||| |||||||| || |||||   |||  |||    | | || || |  |||||||||||||| |    
T  17718211 tcaatcaaagcggacaacccatcttttgcatcgggaagaaaaaagtaaatggagaatgcacgcccata---attgccttgtttgtaaggaagaccaagaa 17718115  T
Q  344 ccttaaaaccatcaaaaacactgataaactgactctccctgctagtcatgaagggaaccttgaatgagctaccatctagaaggtgaaaatcatagtcttt 443  Q
    | |||||||||||||||  |||||||||||||   | | |||| ||||| ||||||||||| | |||  | ||||  ||||||| |||||||||||| ||    
T  17718114 ctttaaaaccatcaaaagaactgataaactgatcattcttgctggtcataaagggaacctttactgacttgccattgagaaggtcaaaatcatagtcctt 17718015  T
Q  444 tgtttctgaagcgtcaaacggttgatgccatgcacctttaaagtatagtgcattagcaaa 503  Q
     |||| |||||  ||||| ||||| | |||  | ||||| || ||||||||||| |||||    
T  17718014 cgtttttgaagtatcaaagggttgtttccacactcctttgaaatatagtgcatttgcaaa 17717955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 232 - 503
Target Start/End: Complemental strand, 17745233 - 17744966
Alignment:
Q  232 gaagccactttctcaatcaaagctgacaacccatcttttgcaacgggaagtaaaaagtacatagagaaatgacggtcatctatagtaccatgctcataag 331  Q
    ||||| ||||| ||||||||||||||||| ||||||||| |  | ||||| |||||||| ||||||||   |||  |||||    | || || | || ||    
T  17745233 gaagctactttatcaatcaaagctgacaaaccatctttttcgtcaggaagaaaaaagtaaatagagaatgcacgcccatct---ttgccttgtttat-ag 17745138  T
Q  332 gaagaccaaggaccttaaaaccatcaaaaacactgataaactgactctccctgctagtcatgaagggaaccttgaatgagctaccatctagaaggtgaaa 431  Q
    ||||||||||||| ||||||||||| ||   |||||||||||||   | | |||| ||||| ||||||||||| | |||  | || |  ||||||| |||    
T  17745137 gaagaccaaggactttaaaaccatctaacgaactgataaactgatcattcttgctggtcataaagggaacctttactgacttgccgttaagaaggtcaaa 17745038  T
Q  432 atcatagtcttttgtttctgaagcgtcaaacggttgatgccatgcacctttaaagtatagtgcattagcaaa 503  Q
    ||||||||| || |||| |||||  ||||||  ||| | |||| | ||||| ||||||||||||||||||||    
T  17745037 atcatagtccttcgtttttgaagtatcaaacttttgtttccatactcctttgaagtatagtgcattagcaaa 17744966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 232 - 509
Target Start/End: Complemental strand, 16722276 - 16722002
Alignment:
Q  232 gaagccactttctcaatcaaagctgacaacccatcttttgcaacgggaagtaaaaagtacatagagaaatgacggtcatctatagtaccatgctcataag 331  Q
    ||||| ||||| |||||||||  ||||||||||||||||    | ||||| |||||||| ||||||||   ||| |||||| |    || || | |||||    
T  16722276 gaagctactttatcaatcaaatttgacaacccatcttttttgtcaggaagaaaaaagtaaatagagaatgcacgttcatctttg---ccttgtttataag 16722180  T
Q  332 gaagaccaaggaccttaaaaccatcaaaaacactgataaactgactctccctgctagtcatgaagggaaccttgaatgagctaccatctagaaggtgaaa 431  Q
    ||||||||||||| ||||||||||| ||   |||||||||||||   | | |||| ||||| || |||||||| | |||  | ||||  ||||||| |||    
T  16722179 gaagaccaaggactttaaaaccatctaacgaactgataaactgatcattcttgctggtcataaatggaacctttactgacttgccattgagaaggtcaaa 16722080  T
Q  432 atcatagtcttttgtttctgaagcgtcaaacggttgatgccatgcacctttaaagtatagtgcattagcaaaaatgag 509  Q
    ||||||||| || |||| || ||  || ||| |||| | |||  | ||||| || ||||||||||||||||| |||||    
T  16722079 atcatagtccttcgtttttgtagtatcgaactgttgtttccacactcctttgaaatatagtgcattagcaaagatgag 16722002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 232 - 509
Target Start/End: Complemental strand, 17699290 - 17699016
Alignment:
Q  232 gaagccactttctcaatcaaagctgacaacccatcttttgcaacgggaagtaaaaagtacatagagaaatgacggtcatctatagtaccatgctcataag 331  Q
    ||||| ||||| |||||||||  ||||||||||||||||    | ||||| |||||||| ||||||||   ||| |||||| |    || || | |||||    
T  17699290 gaagctactttatcaatcaaatttgacaacccatcttttttgtcaggaagaaaaaagtaaatagagaatgcacgttcatctttg---ccttgtttataag 17699194  T
Q  332 gaagaccaaggaccttaaaaccatcaaaaacactgataaactgactctccctgctagtcatgaagggaaccttgaatgagctaccatctagaaggtgaaa 431  Q
    ||||||||||||| ||||||||||| ||   |||||||||||||   | | |||| ||||| || |||||||| | |||  | ||||  ||||||| |||    
T  17699193 gaagaccaaggactttaaaaccatctaacgaactgataaactgatcattcttgctggtcataaatggaacctttactgacttgccattgagaaggtcaaa 17699094  T
Q  432 atcatagtcttttgtttctgaagcgtcaaacggttgatgccatgcacctttaaagtatagtgcattagcaaaaatgag 509  Q
    ||||||||| || |||| || ||  || ||| |||| | |||  | ||||| || ||||||||||||||||| |||||    
T  17699093 atcatagtccttcgtttttgtagtatcgaactgttgtttccacactcctttgaaatatagtgcattagcaaagatgag 17699016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 232 - 439
Target Start/End: Complemental strand, 35162564 - 35162361
Alignment:
Q  232 gaagccactttctcaatcaaagctgacaacccatcttttgcaacgggaagtaaaaagtacatagagaaatgacggtcatctatagtaccatgctcataag 331  Q
    |||||||| ||||||| |||||||||||  ||||||||||||   ||||| |||| |||||||||||| |  || |||||| |    || |||| |||||    
T  35162564 gaagccaccttctcaaccaaagctgacaggccatcttttgcatttggaag-aaaatgtacatagagaatttccgctcatctttt---ccttgcttataag 35162469  T
Q  332 gaagaccaaggaccttaaaaccatcaaaaacactgataaactgactctccctgctagtcatgaagggaaccttgaatgagctaccatctagaaggtgaaa 431  Q
    |||||| ||| || ||||||||||||||| | || |||||||||       || ||||||||||||||||||||| |||||| ||||  |||||||||||    
T  35162468 gaagacgaagaactttaaaaccatcaaaagctctaataaactgatcaaggttggtagtcatgaagggaaccttgactgagcttccattcagaaggtgaaa 35162369  T
Q  432 atcatagt 439  Q
    ||||||||    
T  35162368 atcatagt 35162361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 397 - 511
Target Start/End: Complemental strand, 15555976 - 15555862
Alignment:
Q  397 ggaaccttgaatgagctaccatctagaaggtgaaaatcatagtcttttgtttctgaagcgtcaaacggttgatgccatgcacctttaaagtatagtgcat 496  Q
    |||||||||| |||||||||||  ||||||||||||||||||||||| ||||  ||||| ||||||   |||| ||||   ||||||||||| |||||||    
T  15555976 ggaaccttgagtgagctaccattgagaaggtgaaaatcatagtctttcgttttggaagcatcaaacttctgataccatagtcctttaaagtacagtgcat 15555877  T
Q  497 tagcaaaaatgagtc 511  Q
    | ||||| |||||||    
T  15555876 ttgcaaagatgagtc 15555862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 232 - 446
Target Start/End: Complemental strand, 35155544 - 35155333
Alignment:
Q  232 gaagccactttctcaatcaaagctgacaacccatcttttgcaacgggaagtaaaaagtacatagagaaatgacggtcatctatagtaccatgctcataag 331  Q
    |||||||| ||||||| ||||||||| |  ||||||||||||   ||||| |||| |||||||||||| |  || |||||| |    || |||| ||| |    
T  35155544 gaagccaccttctcaaccaaagctgatagtccatcttttgcatttggaagaaaaatgtacatagagaatttccgctcatctttt---ccttgcttatacg 35155448  T
Q  332 gaagaccaaggaccttaaaaccatcaaaaacactgataaactgactctccctgctagtcatgaagggaaccttgaatgagctaccatctagaaggtgaaa 431  Q
    |||||| ||| || ||||||||||||||| | || ||||| |||      ||||| ||||||||||||||||||| |||||| ||||  |||||||||||    
T  35155447 gaagacgaagaactttaaaaccatcaaaagctctaataaattgatcaaggctgctggtcatgaagggaaccttgactgagctgccattcagaaggtgaaa 35155348  T
Q  432 atcatagtcttttgt 446  Q
    |||||| | ||||||    
T  35155347 atcatatttttttgt 35155333  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 35162732 - 35162669
Alignment:
Q  78 gagtctactatttttgttaaacctccatcagagaaaggtaaaatcactcccaactccttcagca 141  Q
    ||||| || |||||||| |||||||||  ||||||||||||||||||||| |  ||||||||||    
T  35162732 gagtccaccatttttgtcaaacctccagaagagaaaggtaaaatcactcctagatccttcagca 35162669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 76 - 158
Target Start/End: Complemental strand, 35155714 - 35155632
Alignment:
Q  76 gagagtctactatttttgttaaacctccatcagagaaaggtaaaatcactcccaactccttcagcatattagaaagttcaagc 158  Q
    ||||||| || |||||||| ||||| |||  ||||||||||||||||||||| |  || |||||||||| ||||  |||||||    
T  35155714 gagagtccaccatttttgtcaaacccccagaagagaaaggtaaaatcactcctaggtctttcagcatatgagaagattcaagc 35155632  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 327 - 446
Target Start/End: Original strand, 21464281 - 21464400
Alignment:
Q  327 ataaggaagaccaaggaccttaaaaccatcaaaaacactgataaactgactctccctgctagtcatgaagggaaccttgaatgagctaccatctagaagg 426  Q
    ||||||||||| |||||| ||||||||||||| |||||||||| ||||  || |   ||| |||||||| ||||||||||  | ||||||||  |||| |    
T  21464281 ataaggaagacgaaggactttaaaaccatcaagaacactgatatactgcatcacatagctggtcatgaaaggaaccttgaccgggctaccattaagaatg 21464380  T
Q  427 tgaaaatcatagtcttttgt 446  Q
    |||||||| |||||| ||||    
T  21464381 tgaaaatcgtagtctcttgt 21464400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 162
Target Start/End: Original strand, 9675525 - 9675611
Alignment:
Q  76 gagagtctactatttttgttaaacctccatcagagaaaggtaaaatcactcccaactccttcagcatattagaaagttcaagcccaa 162  Q
    ||||||| || |||||||| |||||||||  ||||||||||||||||||||| | |||||||| |||   ||||  |||||||||||    
T  9675525 gagagtccaccatttttgtcaaacctccagaagagaaaggtaaaatcactcctagctccttcatcattcgagaagtttcaagcccaa 9675611  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 162
Target Start/End: Original strand, 9692547 - 9692633
Alignment:
Q  76 gagagtctactatttttgttaaacctccatcagagaaaggtaaaatcactcccaactccttcagcatattagaaagttcaagcccaa 162  Q
    ||||||| || |||||||| |||||||||  ||||||||||||| ||||||| |||||||||  ||||  ||||  |||||||||||    
T  9692547 gagagtccaccatttttgtcaaacctccagaagagaaaggtaaactcactcctaactccttcgtcatacgagaagtttcaagcccaa 9692633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 162
Target Start/End: Original strand, 21464019 - 21464105
Alignment:
Q  76 gagagtctactatttttgttaaacctccatcagagaaaggtaaaatcactcccaactccttcagcatattagaaagttcaagcccaa 162  Q
    ||||||| || |||||||| ||| |||| |||||||||||||||| ||| || | ||| |||||||||| ||||  |||||||||||    
T  21464019 gagagtccaccatttttgtcaaagctccttcagagaaaggtaaaaccacgcctagctctttcagcatatcagaacattcaagcccaa 21464105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 231 - 299
Target Start/End: Original strand, 21464188 - 21464256
Alignment:
Q  231 ggaagccactttctcaatcaaagctgacaacccatcttttgcaacgggaagtaaaaagtacatagagaa 299  Q
    |||||| || |||| |||||||||| |||| |||||||||||| | ||||| |||||||| || |||||    
T  21464188 ggaagcaaccttcttaatcaaagctaacaatccatcttttgcatcaggaagaaaaaagtaaattgagaa 21464256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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