View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8965_low_7 (Length: 502)
Name: NF8965_low_7
Description: NF8965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8965_low_7 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 9494143 - 9493949
Alignment:
| Q |
19 |
atattaattcataataatatttaataaaagctactcccatttaaaagactattcttttgtgatactttacctgcaactcccatataagaaaataaaagag |
118 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9494143 |
atattaattcataataataattaataaaagctactcccatttaaaagactattcttttgtgatactttacctgcaactcccatataagaaaataaaagag |
9494044 |
T |
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| Q |
119 |
agagaatgtttttgtcttcattgtatctccttcttttcatttagatggaacaaccatacaaaatcacaatgaaattggacagagaagaataatgg |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9494043 |
agagaatgtttttgtcttcattgtatctccttcttttcatttagatggaacaaccatacaaaatcacaatgaaattggacagagaagaataatgg |
9493949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 287 - 483
Target Start/End: Complemental strand, 9493875 - 9493679
Alignment:
| Q |
287 |
attggttgatgattgatgatatagatctagatatcagattgttgatcctggnnnnnnnncctgagcttgcaaacaatctttgttaatggttatgttgtac |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
9493875 |
attggttgatgattgatgatatagatctagatatcagattgttgatcctggttttttttcctgagcttgcaaacaatctttgttaatagttatgttgtac |
9493776 |
T |
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| Q |
387 |
ccgcataaaccgatccgcgtaacccgtaacccgtgttacccgaacccgtctaaaccgaaacagaaaaatgggcagcgaggggtctgcatatgtcaac |
483 |
Q |
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| T |
9493775 |
ccgcatacaccgacccgcgtaacccgtaacccgtgttacccgaacccgtctaaaccgaaacagaaaaatgggcagcgaggggtctgcatatgtcaac |
9493679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 445
Target Start/End: Original strand, 36115926 - 36115987
Alignment:
| Q |
384 |
tacccgcataaaccgatccgcgtaacccgtaacccgtgttacccgaacccgtctaaaccgaa |
445 |
Q |
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| T |
36115926 |
tacccgcagtaaccgatccgtgcaacccgcaacccgtgtaacccgaacccgtccaatccgaa |
36115987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 41120364 - 41120558
Alignment:
| Q |
19 |
atattaattcataataatatttaataaaagctactcccatttaaaagactattcttttgtgatactttacctgcaactcccatataagaaaataaaagag |
118 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41120364 |
atattaattcataataataattaataaaagctactcccatttaaaagactattcttttgtgatactttacctgcaactcccatataagaaaataaaagag |
41120463 |
T |
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| Q |
119 |
agagaatgtttttgtcttcattgtatctccttcttttcatttagatggaacaaccatacaaaatcacaatgaaattggacagagaagaataatgg |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41120464 |
agagaatgtttttgtcttcattgtatctccttcttttcatttagatggaacaaccatacaaaatcacaatgaaattggacagagaagaataatgg |
41120558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 287 - 483
Target Start/End: Original strand, 41120632 - 41120828
Alignment:
| Q |
287 |
attggttgatgattgatgatatagatctagatatcagattgttgatcctggnnnnnnnncctgagcttgcaaacaatctttgttaatggttatgttgtac |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
41120632 |
attggttgatgattgatgatatagatctagatatcagattgttgatcctggttttttttcctgagcttgcaaacaatctttgttaatagttatgttgtac |
41120731 |
T |
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| Q |
387 |
ccgcataaaccgatccgcgtaacccgtaacccgtgttacccgaacccgtctaaaccgaaacagaaaaatgggcagcgaggggtctgcatatgtcaac |
483 |
Q |
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| T |
41120732 |
ccgcatacaccgacccgcgtaacccgtaacccgtgttacccgaacccgtctaaaccgaaacagaaaaatgggcagcgaggggtctgcatatgtcaac |
41120828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 445
Target Start/End: Complemental strand, 8291500 - 8291439
Alignment:
| Q |
384 |
tacccgcataaaccgatccgcgtaacccgtaacccgtgttacccgaacccgtctaaaccgaa |
445 |
Q |
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|||||||| |||||||||| | |||||| ||||||||| ||||||||||||| || ||||| |
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| T |
8291500 |
tacccgcagtaaccgatccgtgcaacccgcaacccgtgtaacccgaacccgtccaatccgaa |
8291439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 287 - 483
Target Start/End: Complemental strand, 102517 - 102321
Alignment:
| Q |
287 |
attggttgatgattgatgatatagatctagatatcagattgttgatcctggnnnnnnnncctgagcttgcaaacaatctttgttaatggttatgttgtac |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
102517 |
attggttgatgattgatgatatagatctagatatcagattgttgatcctggttttttttcctgagcttgcaaacaatctttgttaatagttatgttgtac |
102418 |
T |
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| Q |
387 |
ccgcataaaccgatccgcgtaacccgtaacccgtgttacccgaacccgtctaaaccgaaacagaaaaatgggcagcgaggggtctgcatatgtcaac |
483 |
Q |
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||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
102417 |
ccgcatacaccgacccgcgtaacccgtaacccgtgttacccgaacccgtctaaaccgaaacagaaaaatgggcagcgaggggtctgcatatgtcaac |
102321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 19 - 184
Target Start/End: Original strand, 107288 - 107452
Alignment:
| Q |
19 |
atattaattcataataatatttaataaaagctactcccatttaaaagactattcttttgtgatactttacctgcaactcccatataagaaaataaaagag |
118 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
107288 |
atattaattcataataataattaataaaagctactcccatttaaaagactattcttttgtgatactttacctgcaactcccatataagaaaataaaagag |
107387 |
T |
|
| Q |
119 |
agagaatgtttttgtcttcattgtatctccttcttttcatttagatggaacaaccatacaaaatca |
184 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
107388 |
agagaatgtttttgtcttca-tgtatctccttcttttcatttagatggaacaaccatacaaaatca |
107452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 445
Target Start/End: Original strand, 50442358 - 50442419
Alignment:
| Q |
384 |
tacccgcataaaccgatccgcgtaacccgtaacccgtgttacccgaacccgtctaaaccgaa |
445 |
Q |
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|||||||| |||||||||| | |||||| ||||||||| ||||||||||||| || ||||| |
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| T |
50442358 |
tacccgcagtaaccgatccgtgcaacccgcaacccgtgtaacccgaacccgtccaatccgaa |
50442419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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