View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8966_high_11 (Length: 332)
Name: NF8966_high_11
Description: NF8966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8966_high_11 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 26949317 - 26949632
Alignment:
| Q |
18 |
atctttagatccaactaatcgagatcatcactatctttataagacaaaa-atattaaacacccctaaattttatacacttattcaacatattattctctc |
116 |
Q |
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| T |
26949317 |
atctttagatccaactaattgagatcatcactatctttataagacaaaaaatattaaacacccctaaattttatacacttattcaacatattattctctc |
26949416 |
T |
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| Q |
117 |
tttatatatttctctttctatcacatcaataacatattacattactctgcattatctttttatctctcaaaatgtcaaatggtttttgatgtttatcaat |
216 |
Q |
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| T |
26949417 |
tttatatatatctctttctatcacatcaacaacatattacattactctacattatctttttatctctcaaaatgtcaaatggtttttgatgtttatcaat |
26949516 |
T |
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| Q |
217 |
cttttttctatcaaacaatgtctttgcatgccctcttggtttaaaaagaaaataatcacaaaagacttttaacaagtaagtatatttcaagnnnnnnnta |
316 |
Q |
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| T |
26949517 |
cttttttctatcaagcaatgtctttgcatgccctcttggtttaaaaagaaaatagtcccaaaagacttttaacaagtaagtatatttgaagaaaaaaata |
26949616 |
T |
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| Q |
317 |
ggagattggatagttc |
332 |
Q |
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| T |
26949617 |
ggagattggatagttc |
26949632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 36424744 - 36424704
Alignment:
| Q |
81 |
taaattttatacacttattcaacatattattctctctttat |
121 |
Q |
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| T |
36424744 |
taaattttatacacttatttaacattttattttctctttat |
36424704 |
T |
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