View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8966_high_17 (Length: 207)
Name: NF8966_high_17
Description: NF8966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8966_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 24087262 - 24087072
Alignment:
| Q |
1 |
tcaatggatttttgacttactcgtacttattttgcagttattatgatattcgtgatattatactcccctcagatgttatattattttttggtaagtaatt |
100 |
Q |
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| T |
24087262 |
tcaatggatttttgacttactcgtacttatttttcagttattatgatattcgtgatattatactcccctcagatgttatattattttttggtaagtaatt |
24087163 |
T |
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| Q |
101 |
acttaaaatttaatgtgtatatgctactagatttcatattaccattgacccttatccttttcagcgctggataatactgtcggtctctgtg |
191 |
Q |
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| T |
24087162 |
acttaaaattgaatgtgtatatgctactagatttcatattaacattgacccttatccttttcagcgctggataatactgtcggtctttgtg |
24087072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 24091324 - 24091134
Alignment:
| Q |
1 |
tcaatggatttttgacttactcgtacttattttgcagttattatgatattcgtgatattatactcccctcagatgttatattattttttggtaagtaatt |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24091324 |
tcaatggatatttgacttactcgtacttattttgcagttattatgatattcgtgatattatactcccctcagatgttatattattttttggtaagtaatt |
24091225 |
T |
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| Q |
101 |
acttaaaatttaatgtgtatatgctactagatttcatattaccattgacccttatccttttcagcgctggataatactgtcggtctctgtg |
191 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24091224 |
acttaaaatttaatgtgtatattctactagatttcatattaccatcgacccttatccttttcagcgctggataatactgtcggtctttgtg |
24091134 |
T |
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