View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8966_high_5 (Length: 490)
Name: NF8966_high_5
Description: NF8966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8966_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 182; Significance: 3e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 15 - 248
Target Start/End: Complemental strand, 41260127 - 41259894
Alignment:
| Q |
15 |
agactaatatctcaagctgaatagaactataataagtgacaaaactctccattaagagatttaacactgttatattctcaaactgaatttgaatgcaata |
114 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
41260127 |
agactaatctctcgagctgaatagaactataatgagtgacaaaactctccattaagagatttaacactgttatattctcaaactgaatttgaacgcaata |
41260028 |
T |
|
| Q |
115 |
tctctgtttaagtcggaagagatctgttatgactttaatgaagtgttcttagatatgttaataataacgtgtccacaagttcttgctcatttnnnnnnnn |
214 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
41260027 |
tctctgtttaagtcggaagagatctattatgactttaatgaagtgttcttagatatgttaataataacgtgtccacaagttcttgctcaattaaaaaaaa |
41259928 |
T |
|
| Q |
215 |
tgttgaaattgtgagatcggatgttgtgattgaa |
248 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |
|
|
| T |
41259927 |
tgttgaaattgtgagatcggatgttatgattgaa |
41259894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University