View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8966_high_8 (Length: 436)
Name: NF8966_high_8
Description: NF8966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8966_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 35522039 - 35521619
Alignment:
| Q |
1 |
tccaacccataatactccatctctttcctcaacctcactaatagaccttctattaccacttttatgatcttcaacaatttccaacacatcaccctcctca |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
35522039 |
tccaacccataatactccatctctttcctcaacctcactaatagatcttctattaccacttttatgatcttcaacaatttccaacaaatcaccctcctca |
35521940 |
T |
|
| Q |
101 |
cttagcctaattgccaatccgatactccctttcaccttagctaaatatgaataagtttttgttatgtctaaaggaagcataaccaacccttttcctatcc |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35521939 |
cttagcctaattgccaatccggtactccctttcaccttagctaaatatgaataagtttttgttatgtctaaaggaagcataaccaacccttttcctatcc |
35521840 |
T |
|
| Q |
201 |
aaggatatgatagcatccattggataaattttcctcttcttgagttaattccaacccaaaatcctcctcttggactccgttttatgttgtcgggaaaacc |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35521839 |
aaggatatgatagcatccattggataaattttcctcttcttgagttaattccaacccaaaatcctcctcttggactccgttttatgttgtcgggaaaacc |
35521740 |
T |
|
| Q |
301 |
tggtagattagcaaatacttccaatgttccagctttacgtgtttctaaccaataccttaatattctacattttgtagtctctgatattagaatataatta |
400 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35521739 |
tggtagattagcaaatacttccaatgttccagctttaggtgtttctaaccaataccttaatattctacattttgtagtctctgatattagaatataatta |
35521640 |
T |
|
| Q |
401 |
ccatttttgctaagtgctact |
421 |
Q |
| |
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||||||||||||||||||||| |
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| T |
35521639 |
ccatttttgctaagtgctact |
35521619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 35525617 - 35525197
Alignment:
| Q |
1 |
tccaacccataatactccatctctttcctcaacctcactaatagaccttctattaccacttttatgatcttcaacaatttccaacacatcaccctcctca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
35525617 |
tccaacccataatactccatctctttcctcaacctcagtaatagaacttctattaccacttctatgatcttcaacaatttccaacacatcaccctcctca |
35525518 |
T |
|
| Q |
101 |
cttagcctaattgccaatccgatactccctttcaccttagctaaatatgaataagtttttgttatgtctaaaggaagcataaccaacccttttcctatcc |
200 |
Q |
| |
|
|| ||||||||||| ||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
35525517 |
ctaagcctaattgctaatccaggactccctttcttcttagacaaatatgaataagtttttgttatgtctaaaggaagcatgaccaacccttttcctatcc |
35525418 |
T |
|
| Q |
201 |
aaggatatgatagcatccattggataaattttcctcttcttgagttaattccaacccaaaatcctcctcttggactccgttttatgttgtcgggaaaacc |
300 |
Q |
| |
|
|||||||||||| ||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35525417 |
aaggatatgatatcatccattgaataagtttttctcttcttgagttaattccaacccaaaatcctcctcttggactccgttttatgttgtcgggaaaacc |
35525318 |
T |
|
| Q |
301 |
tggtagattagcaaatacttccaatgttccagctttacgtgtttctaaccaataccttaatattctacattttgtagtctctgatattagaatataatta |
400 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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|
| T |
35525317 |
tggtagattagcaaagacttccagtgttccagctttaggtgtttctaaccaataccttaatattctacattttgtagtctctgatattaaaatatagtta |
35525218 |
T |
|
| Q |
401 |
ccatttttgctaagtgctact |
421 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
35525217 |
ccatttttgctaagtgctact |
35525197 |
T |
|
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