View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8966_low_11 (Length: 523)
Name: NF8966_low_11
Description: NF8966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8966_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 231 - 517
Target Start/End: Complemental strand, 1539776 - 1539490
Alignment:
| Q |
231 |
atcctaggtttgtgatatgacagtgatgaataattgtttttgtttacagtgtctatcgcccctgttggtgctgctactcctggtatgtttccttatgcca |
330 |
Q |
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| T |
1539776 |
atcctaggtttgtgacatgacagtgatgaataattgtttttgtttacagtgtctatcgcccctgttggtgctgctactcctggtatgtttccttatgcca |
1539677 |
T |
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| Q |
331 |
tttacaaatcattggttttgatattctgtattgaattttgttccaaattaaaaatggagtcatatatgcttgattcatatgataaagaggatcttagctt |
430 |
Q |
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| T |
1539676 |
tttacaaatcattggttttgatattctgtattgaattttgttccaaattaaaaatggagtcatatatgcttgattcatatgataaagaggatcttagctt |
1539577 |
T |
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| Q |
431 |
tacaacagtttttgcaagaatgagttaaaccgtaatataaaaatttaatatgatatcagattctatctattcagatcaaccaccaaa |
517 |
Q |
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| T |
1539576 |
tacaacagtttttgtaagaatgagttaaacggtaatataaaaatttaatatgatatcagattctatctattcagatcaaccaccaaa |
1539490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 1539865 - 1539773
Alignment:
| Q |
16 |
aaaaatagacacgaacacaacacagacacaatttagtgtaatcacatgtctcggcgtcagtccgtgtgtctgacaccaggacacttctaatcc |
108 |
Q |
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| T |
1539865 |
aaaaatagacacgaacacaacacagacacaatttagtgtaatcacatgtctcggcgtcggtccgtgtgtctgacactgggacacttctaatcc |
1539773 |
T |
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