View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8966_low_15 (Length: 473)
Name: NF8966_low_15
Description: NF8966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8966_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 12 - 463
Target Start/End: Original strand, 3346247 - 3346698
Alignment:
| Q |
12 |
aaaaacaacatcagcagctgttaagttggtataagcattttttaccatgtatcgctgggaaggatgaagtttccaaacccaccggttaaccacctcaacc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
3346247 |
aaaaacaacatcagcagctgttaagttggtataagcattttttaccatgtatcgttgggaaggatgaagtttccaaacccaccgatcaaccacctcaacc |
3346346 |
T |
|
| Q |
112 |
tgcaaaacaacgatagataatcgattcaagagaggaatcatcaagtcacggatcctttcaaaaacaaagtagaacacattaacttcagccagacagcccc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3346347 |
tgcaaaacaacgatagataatcgattcaagagaggaatcatcaagtcacggatcctttcaaaaacaaagtagaacacattaacttcagccagacagcccc |
3346446 |
T |
|
| Q |
212 |
tactatcttgtaaatttagccactacacctaacgtttttatttcctttctgttctgtagccacaagcaattggtctgttgtattatttacttttctaata |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
3346447 |
tactatcttgtaaatttagccactacacctaacgtttttatttcctttctgttctgtagccacaagcaattggtatattgtattatttacttttctaata |
3346546 |
T |
|
| Q |
312 |
tctcatttctcgtctttatannnnnnnnnncaattctttttggattaaatatgttcttcatctcaataaaatataaatcttgtacttttaattcttactt |
411 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3346547 |
tctcatttgtcgtctttatattttttttttcaattctttttggattaaatatgttcttcatttcaataaaatataaatcttgtacttttaattcttactt |
3346646 |
T |
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| Q |
412 |
aaggcnnnnnnnaattctaacaaaattattctgcacgtagtaatagtctctg |
463 |
Q |
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| T |
3346647 |
aaggctttttttaattctaacaaaattattctgcaagtagtaatagtctctg |
3346698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 224 - 463
Target Start/End: Original strand, 3331260 - 3331498
Alignment:
| Q |
224 |
aatttagccactacacctaacgtttttattt-cctttctgttctgtagccacaagcaattggtctgttgtattatttacttttctaatatctcatttctc |
322 |
Q |
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|||||||||||||||| |||||||||| ||| ||||||| ||||||||||||||||||||| | | |||||||||||| ||||| ||||||||||||||| |
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| T |
3331260 |
aatttagccactacacataacgttttttttttcctttctattctgtagccacaagcaattgatatattgtattatttatttttccaatatctcatttctc |
3331359 |
T |
|
| Q |
323 |
gtctttatannnnnnnnnncaattctttttggattaaatatgttcttcatctcaataaaatataaatcttgtacttttaattcttacttaaggcnnnnnn |
422 |
Q |
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| T |
3331360 |
gtctttatatttttttttg-aattctttttggattaaatatgttcttcatctcaataaaatatatatcttgtac-tttaattcttacttaaggctttttt |
3331457 |
T |
|
| Q |
423 |
naattctaacaaaattattctgcacgtagtaatagtctctg |
463 |
Q |
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| T |
3331458 |
tatttctaacaaaatcattctgcacgtagtaatagtctctg |
3331498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 14 - 139
Target Start/End: Original strand, 3329306 - 3329431
Alignment:
| Q |
14 |
aaacaacatcagcagctgttaagttggtataagcattttttaccatgtatcgctgggaaggatgaagtttccaaacccaccggttaaccacctcaacctg |
113 |
Q |
| |
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|||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||| | ||||||||||||| |
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| T |
3329306 |
aaacaacatcagtagttgttaagttggtataagcattttttaccatgtatcgttgggaaggatgaagtttacaaaccgaccggtcatccacctcaacctg |
3329405 |
T |
|
| Q |
114 |
caaaacaacgatagataatcgattca |
139 |
Q |
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| T |
3329406 |
caaaacaacgttagataatcgattca |
3329431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 137 - 223
Target Start/End: Original strand, 3330293 - 3330378
Alignment:
| Q |
137 |
tcaagagaggaatcatcaagtcacggatcctttcaaaaacaaagtagaacacattaacttcagccagacagcccctactatcttgta |
223 |
Q |
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| T |
3330293 |
tcaagagaggaatcatcaactcacagatcctttcaaaa-caaagtagaacacattaacttcagccggacagcccctactatcttgta |
3330378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 131
Target Start/End: Original strand, 27239348 - 27239468
Alignment:
| Q |
11 |
caaaaacaacatcagcagctgttaagttggtataagcattttttaccatgtatcgctgggaaggatgaagtttccaaacccaccggttaaccacctcaac |
110 |
Q |
| |
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||||| ||||||||||| | |||||||| |||||||| |||| || |||| || ||||||| |||||| ||||| || ||| ||| ||||||||| |
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| T |
27239348 |
caaaatcaacatcagcaacaattaagttgttataagcacttttcactgtgtaacgatgggaagaatgaagcttccagactcactggtccgacacctcaac |
27239447 |
T |
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| Q |
111 |
ctgcaaaacaacgatagataa |
131 |
Q |
| |
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|||||||| ||| ||||||| |
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| T |
27239448 |
ctgcaaaatcacgttagataa |
27239468 |
T |
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